FMO14111.5prime Sequence
679 bp (679 high quality bases) assembled on 2014-07-11
> FMO14111.5prime
TCAGTCGACATGCGCGCCGTTTACGACTTGTTGCTGAGCAACGCCTTTGA
TCCCAGAATGGTACTACAAAACCACAACACTGTGGTGGCCCGTTCCACCT
TGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACATCCAGCTGGA
ACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGCCGGACCCAG
CACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGGCCGTGCCGG
TGCTTATCCTCTGCGCCCTGCAGTTGGAGAAGAATCTGCGGGACAATAGC
GTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGATGCTGGTGAT
CAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCGTCTGCATTT
GGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAATGGAGCCATG
CCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGACTCACTGCC
GCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGCCGACCTACG
AATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAGCCGGCACAG
ACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCCCGGGGTCCA
CCCTGCACATCGCAAGCTTTCTAGACCAT
FMO14111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13004-RD | 2321 | CG13004-RD | 945..1600 | 5..661 | 3245 | 99.7 | Plus |
| CG13004-RC | 936 | CG13004-RC | 42..651 | 51..661 | 3030 | 99.8 | Plus |
| CG13004-RA | 1392 | CG13004-RA | 62..671 | 51..661 | 3030 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16827676..16828081 | 456..51 | 2030 | 100 | Minus |
| X | 23542271 | X | 16827402..16827605 | 661..457 | 975 | 99.5 | Minus |
| X | 23542271 | X | 16829040..16829091 | 56..5 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:21:30 has no hits.
FMO14111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:06 Download gff for
FMO14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RD | 497..1154 | 1..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:39 Download gff for
FMO14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RD | 943..1600 | 1..661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:39 Download gff for
FMO14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16827402..16827605 | 457..661 | 99 | <- | Minus |
| X | 16827676..16828075 | 57..456 | 100 | <- | Minus |
| X | 16829040..16829093 | 1..56 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:06 Download gff for
FMO14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16723073..16723126 | 1..56 | 94 | | Minus |
| arm_X | 16721435..16721638 | 457..661 | 99 | <- | Minus |
| arm_X | 16721709..16722108 | 57..456 | 100 | <- | Minus |
