FMO14114.5prime Sequence
981 bp (848 high quality bases) assembled on 2014-07-11
> FMO14114.5prime
TCAGTCGACATGATGAAGTTTTCATTGCTTTTTCTGCTGGCCTGGAGCTG
TGTGTTTCTGGGAAGCACGGGTTCTCTAAATCGGATTGGGAATTCTGATA
TAGGCTTTAAATCCTTGGAGGAGCTAGTCTTGATTAGAAAGACTTTGGCT
GCACAGGCACTAAAGCTAAGGGGCTTGGAGATAAATCTGCATCGCGTGCT
CAGCAAGGTGGTGTTACTCGCCGATGCAGTTGTGCAAGTACCTGGAAGAT
ACTCCTCCAAAGAAGATCCCCTTGCCGTTCTATCTGAACGTCTAAATTTG
TTGCTGGAGCGACTGAACCAGGAAGAAAGAATATCTACGAATTTGCTGGA
ACTCAAAGAGTGGTCAACTAAAGTGTGCCAAGAACCTTCCCCAAGCCAGA
CCTTACCAAAGGAACTTACTGAAGAAAAGGACGAGCCGAAAGTGGACTTT
TACCAGCCCGCCAAATCCGATTGCCATGAGCTTGACGAAGGTGTCCGGGT
GGATGGCGTCTATAGGTTTCTGGTTCCGGAGCGCAATGAAGTCCAGCGTG
ATTTGTACGAGCGTTATTGCGCCTTCGCCACCGACGGCCCCGCCTGGACA
GTGATCCAGAGTAGAGGCGGCTCCTTCGATCCGCACGAAAATTTCAATCG
CAGCTGGGACGAGTATCGCGCGGGTTTTGGTAACTTATCCCGAGACTTCT
GGTTTGACAACGAGTTCGCGCACAAGATTCTCTACCGCGACGATCATGAG
CTGAGAATTGAGCTGCAGGATGCAGGGAACCGCTGGATTGGCGGAGTATC
CACTCTTCTGACTAGACAGCGAGAGTTATGACTATCAGCTTTCGGTGGCC
TGTGAATTCCGTCTCCCTACCGGACGCTCCTGGAGCAGCATCATCGGATG
ATTCAGCACTTACGATCGACGAAGGTAACCACGCGTAATCCGCCGAATTC
CACCTGTGGCGAGAATTACGGGGGTGCTGGG
FMO14114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9593-RB | 1270 | CG9593-RB | 3..977 | 5..976 | 4420 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15802339..15802769 | 15..445 | 2155 | 100 | Plus |
| 3R | 32079331 | 3R | 15802826..15803360 | 445..976 | 2055 | 95.2 | Plus |
Blast to na_te.dros performed 2014-11-29 00:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2604..2657 | 73..20 | 117 | 68.5 | Minus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2498..2551 | 73..20 | 117 | 68.5 | Minus |
FMO14114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:29 Download gff for
FMO14114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9593-RB | 1..982 | 3..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:00:09 Download gff for
FMO14114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9593-RB | 1..982 | 3..981 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:00:09 Download gff for
FMO14114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15802339..15802769 | 15..445 | 100 | -> | Plus |
| 3R | 15802827..15803365 | 446..981 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:29 Download gff for
FMO14114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11628061..11628491 | 15..445 | 100 | -> | Plus |
| arm_3R | 11628549..11629087 | 446..981 | 95 | | Plus |
