FMO14116.5prime Sequence
962 bp (934 high quality bases) assembled on 2014-07-11
> FMO14116.5prime
TCAGTCGACATGAAGATCTGTGCTCAAATAATTGGAATTATAGTTTTAGC
AAGGCTCCTTAAGGAGGTTGATGGAAAAGGAGAAATTTCAGACCTGGAAT
CTCTGGCCAAGACCGATGCAATGTACACTGCCCTGCTGAAGGAGATAAAT
TCAACTTTTCACAAAAGACCGTTGCTGGCAGAAAAAAATGCAGAGTTCGA
AAAGAATTTCCAAACAGTTTTAGTTGCTCTAAACTTAAGCATGTATGAAA
TAGCTACCAAAATTGATGTCTACACCGACTTTACAGTTTACAATCAAATC
CGATTAGAACTCGAAAGGGAAATCTTTAAGAAGCTACAAGTTGCGGAAAG
ACTTCAGAAGATGGAAAACCTTATGCCAACGTGTCGCATCTTCTTTGCCA
ATCAGCAAGTGCAACTCATTGGCAGTTTCAGTCAATCCAACCTCATGAAA
TTGGAAATATTGAATCATCCGGGTCCAGAGTGCGAAAATGTTGAAGTGCA
AAAAATTTTCATCGCGCCAACTTCATCGACTGCCAGGCCCGATAACTACG
ATACAGAGATTCTAAAAGTTTTGGCCAAATACAGGACACGTCCGTGGGGA
AAAAAGACGTATCGGGATTTCGACGAGAAAATATGGAACCTTTTTATGGC
CATAAACAGCGAAGAGCAAACATTTAAAAAGAACGCATTAGCCGCATTCA
AAAAATATGACGAAGATCGGGCCATTTTGGACAAAGCATTGGCACACCGA
ATTGCAGAATTCGAGAAACAAATTCCGCATGAGACAAATCCGTGCAGGGT
CGATCTAATTCGCTTGAAAAAAGACTGGGACGCGCAATGTTTGAAACTAC
GCAGAAAAGCACAACAGTTTGGTCGCTACGAACTATGTAAAGACTTGTCT
CAATAATCAAATAAAATGTCTGGCAATGAATGATTAACATGCAGCTTTCT
AGAACCAATCCG
FMO14116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33325-RB | 965 | CG33325-RB | 24..960 | 10..940 | 4535 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8678986..8679809 | 917..96 | 4020 | 99.8 | Minus |
| 3R | 32079331 | 3R | 8679951..8680011 | 70..10 | 305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-29 00:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jockey | 5020 | jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). | 2927..2999 | 143..213 | 116 | 67.6 | Plus |
FMO14116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:33 Download gff for
FMO14116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33325-RB | 16..965 | 1..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:00:12 Download gff for
FMO14116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33325-RB | 16..965 | 1..944 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:00:12 Download gff for
FMO14116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8678950..8679808 | 97..947 | 98 | <- | Minus |
| 3R | 8679860..8679885 | 71..96 | 100 | <- | Minus |
| 3R | 8679951..8680018 | 1..70 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:33 Download gff for
FMO14116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4504672..4505530 | 97..947 | 98 | <- | Minus |
| arm_3R | 4505582..4505607 | 71..96 | 100 | <- | Minus |
| arm_3R | 4505673..4505740 | 1..70 | 94 | | Minus |
