FMO14123.5prime Sequence
951 bp (861 high quality bases) assembled on 2014-07-11
> FMO14123.5prime
TCAGTCGACATGTTAAACAGCGCTAATAACAATTCTCCCCAGCACCCGGT
GAGTGCACCATCCGATATCAACATGAATGGCTATAACCGAAAATTGCCAC
AAAAACGTGGCTATGAGATGCCAAAATACTCTGATCCAAAAAAGAAAATG
TGCAAGGAGCGCATTCCCCAGCCGAAGAACACGGTGGCCATGCTGAATGA
GCTAAGACATGGACTGATTTACAAATTGGAGTCACAGACTGGTCCGGTAC
ACGCACCTCTATTCACGATATCCGTGGAGGTCGATGGACAGAAATACTTG
GGCCAGGGCCGTAGTAAAAAAGTTGCACGCATCGAAGCAGCAGCAACTGC
ACTGCGCAGCTTTATACAGTTTAAGGATGGAGCAGTTCTGTCGCCTCTGA
AGCCGGCGGGCAACTTGGACTTTACCAGCGATGAACATCTTGAAAATGGT
ATTGAAAATTTGTCCAGTTCAAAAATGTTTGAGATCATTCAGACGATGTT
GACTGAAAAGCTATCCAACCCTACCTCGCTTGAACAACCCACGTTTTGCA
TGAGTCAGAATGTCAGCAAAAGTGCTATTACTGTTGACGGTCAGAAGAAG
GTTCCAGATAAGGGTCCTGTCATGCTCCTCTACGAATTATTTAATGACGT
TAATTTCGAATGCATTAATATTGACGGCGCCCAGAACAATTGTCGCTTCA
AAATGACCGTCACAATCAACGAAAAGAAGTTCGATGGAACAGGTCCTTCC
AAAAAGACGCGAAAATGCGGCAGCTAAGCGGCACTTGCTTCGTTATGCAA
TATTTCCTACAGTCCAATGTGTGCACAGAGACGTACCCCTGCCATCGACG
ACAGTCGTCATCGATGAGTGCCTCAGATACACCGCGATACGATGTTCGGT
GTCTTAAAAGTTCATTGGAGTAATCAAGCCAGAAGCTTACTCGGTCCAAG
G
FMO14123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adar-RN | 6823 | CG12598-RN | 502..1456 | 9..943 | 4200 | 97.3 | Plus |
| Adar-RD | 2042 | CG12598-RD | 502..1456 | 9..943 | 4200 | 97.3 | Plus |
| Adar-RK | 2073 | CG12598-RK | 551..1505 | 9..943 | 4200 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1779088..1779369 | 278..559 | 1410 | 100 | Plus |
| X | 23542271 | X | 1780062..1780246 | 560..744 | 925 | 100 | Plus |
| X | 23542271 | X | 1778814..1778962 | 133..281 | 745 | 100 | Plus |
| X | 23542271 | X | 1778612..1778699 | 46..133 | 440 | 100 | Plus |
| X | 23542271 | X | 1780329..1780410 | 741..819 | 265 | 93.9 | Plus |
| X | 23542271 | X | 1775702..1775738 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:22:12 has no hits.
FMO14123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:24 Download gff for
FMO14123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RK | 543..1455 | 1..900 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:00:03 Download gff for
FMO14123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RK | 543..1455 | 1..900 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:00:03 Download gff for
FMO14123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1775694..1775738 | 1..45 | 91 | -> | Plus |
| X | 1778612..1778699 | 46..133 | 100 | -> | Plus |
| X | 1778815..1778960 | 134..279 | 100 | -> | Plus |
| X | 1779090..1779369 | 280..559 | 100 | -> | Plus |
| X | 1780062..1780244 | 560..742 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:24 Download gff for
FMO14123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1669727..1669771 | 1..45 | 91 | -> | Plus |
| arm_X | 1672645..1672732 | 46..133 | 100 | -> | Plus |
| arm_X | 1672848..1672993 | 134..279 | 100 | -> | Plus |
| arm_X | 1673123..1673402 | 280..559 | 100 | -> | Plus |
| arm_X | 1674095..1674277 | 560..742 | 100 | -> | Plus |
