FMO14125.5prime Sequence
991 bp (899 high quality bases) assembled on 2014-07-11
> FMO14125.5prime
TCAGTCGACATGAAGCTAATTTCCACAGTTGTTTACCTGCTGGTGGCATT
CTACAAATTCGCCAAGAAACTCTTAATGGGTTCATTTAACTCGGCCCCAA
AGATCAACAATGTGGACTCCCAGGACGATGGCCTGGTACTGCCCTCCGGT
CTAAGCACCCCGGCTCTCCTCCAGCATGTCCAGCAACTGCGTGGCGGTGG
CATCGAGCAGCCATCGCTGCTCACCCGCGGCTTCCTAAAACCGCTGCTGG
CGGACGAGGATGTAGCCGACGGACTGCGATGCCTCAAGCTGAATTCCGTG
TCGAGGGTTTGCAGTGCGCCAGTCGAGGGTGATGACATTCGATTGCTGCA
GTGGAACATCCTATCACAAACTCTCGGGCAGCACAACGATGGATTTGTGC
GCTGTCCCGAGGAGGCTCTCACCTGGGAGCACCGCAAGTACCTGATTGTC
CAGGAGATTCTGCAGAACCAGCCCGATGTGATTTGTCTGCAAGAGGTAGA
CCACTTCAAGTTCCTGCAGACCGTGTTGGGTAGCCAGAACTACGCAGGCA
TCTTCTTCCCGAAACCGGATTCCCCGTGCCTGTACATCGAGCAGAACAAT
GGACCCGATGGCTGTGCCATCTTCTACAAGAGGGACAAACTGCAGCTGCA
GGGATACGACACGAGGATCCTGGAAGTGTGGCGGGTGCAGAGCAACCAGG
TGGCCATCGCGGCCCGGCTGCGTATGCGATCCAGTGGTCGGGAATTCTGT
GTGGCCACCACCCACTTAAAGGCCCGCCATGTCGCCCTTTTGGCGAAATT
ACGGAACGAACAGGGACGTGATCTCATTAGGTTTGTGAAGCAGTTTGCCG
GAGAATCGCCGCTGCTGCTCTGCGCCGATTTCAATGCCGAACCGGTGGGA
GCCATCTATGCCACGATCTTTGGGAGTGATCTCCTTCCGCATTGGTTCCG
CGCGCTTATGCGACGGTGGAGCTAGACTGCGAGGAAGAAAC
FMO14125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cu-RF | 1695 | CG31299-RF | 193..1163 | 10..985 | 4500 | 98.1 | Plus |
| cu-RG | 1970 | CG31299-RG | 531..1438 | 73..985 | 4185 | 97.9 | Plus |
| cu-RH | 1598 | CG31299-RH | 161..1066 | 75..985 | 4175 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11207549..11207991 | 493..935 | 2065 | 97.7 | Plus |
| 3R | 32079331 | 3R | 11206906..11207138 | 75..307 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 11207360..11207482 | 371..493 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 11197784..11197848 | 10..74 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 11207192..11207255 | 307..370 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:22:56 has no hits.
FMO14125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:45 Download gff for
FMO14125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RF | 183..1126 | 1..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:00:34 Download gff for
FMO14125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RF | 183..1126 | 1..945 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:00:34 Download gff for
FMO14125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11197774..11197848 | 1..74 | 94 | -> | Plus |
| 3R | 11206906..11207138 | 75..307 | 100 | -> | Plus |
| 3R | 11207193..11207255 | 308..370 | 100 | -> | Plus |
| 3R | 11207360..11207481 | 371..492 | 100 | -> | Plus |
| 3R | 11207549..11207999 | 493..945 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:45 Download gff for
FMO14125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7033082..7033203 | 371..492 | 100 | -> | Plus |
| arm_3R | 7023496..7023570 | 1..74 | 94 | -> | Plus |
| arm_3R | 7032628..7032860 | 75..307 | 100 | -> | Plus |
| arm_3R | 7032915..7032977 | 308..370 | 100 | -> | Plus |
| arm_3R | 7033271..7033721 | 493..945 | 97 | | Plus |
