FMO14131.5prime Sequence
775 bp (775 high quality bases) assembled on 2014-07-11
> FMO14131.5prime
TCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGGACACTGT
CGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTGGAAACCT
GCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGGGATTATC
CGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCCTACACTA
CGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAAGCAACTG
AATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGAGGATACT
AACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCTTCAGTTT
TGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTGAACAACT
TCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGACGGGATAC
TACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACGGCTGCTA
CTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCTCAGGCCC
AGGTACAGCCTTTGAGCGACTGCGCCTATAGTAGTCTTTTAGCGGGGTTT
CACAAACTCCGCATAGACCGAATGCGTAGCAATGCATTACGTAAGAGTCA
AGGTCCAGAATGTGCGATAAAAACGCGGATTTCTTTTCTTAACTTGGTTG
CAGGCGAACGATGCGGCCAAACCGGGATCGGAGGACGAGGATTTGGAGGT
GCAGTTCGAGCAGCTTCTAGACCAT
FMO14131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8079-RD | 2159 | CG8079-RD | 86..835 | 10..759 | 3720 | 99.7 | Plus |
| CG8079-RE | 2096 | CG8079-RE | 86..715 | 10..639 | 3150 | 100 | Plus |
| CG8079-RC | 2838 | CG8079-RC | 86..715 | 10..639 | 3150 | 100 | Plus |
| CG8079-RE | 2096 | CG8079-RE | 715..772 | 702..759 | 275 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15221896..15222099 | 556..759 | 990 | 99 | Plus |
| 2R | 25286936 | 2R | 15218464..15218657 | 10..203 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 15221429..15221566 | 326..463 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 15218713..15218836 | 202..325 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 15221727..15221823 | 462..558 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:23:17 has no hits.
FMO14131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:53 Download gff for
FMO14131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RD | 86..846 | 10..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:01:03 Download gff for
FMO14131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RD | 86..846 | 10..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:01:03 Download gff for
FMO14131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15218464..15218655 | 10..201 | 100 | -> | Plus |
| 2R | 15218713..15218836 | 202..325 | 100 | -> | Plus |
| 2R | 15221429..15221565 | 326..462 | 100 | -> | Plus |
| 2R | 15221728..15221823 | 463..558 | 100 | -> | Plus |
| 2R | 15221899..15222110 | 559..770 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:53 Download gff for
FMO14131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11108934..11109070 | 326..462 | 100 | -> | Plus |
| arm_2R | 11109233..11109328 | 463..558 | 100 | -> | Plus |
| arm_2R | 11109404..11109615 | 559..770 | 96 | | Plus |
| arm_2R | 11105969..11106160 | 10..201 | 100 | -> | Plus |
| arm_2R | 11106218..11106341 | 202..325 | 100 | -> | Plus |
