FMO14138.5prime Sequence
1023 bp (919 high quality bases) assembled on 2014-07-11
> FMO14138.5prime
TCAGTCGACATGAAGTATACCCTAGTAGTGCTCGCCCTGCTTGCACCTCT
GACTGCAGCAGCTAGTCTGGGTGAACAGAAACCGGAGGCGAATGCGTTCG
TCAAATCTCTGAGAGAACTGCACCGAGGTCCTCCAGTTGAACCAATGAAG
ACCAGGGCTAAGGTGGAGGAGCGCTGGATCACCCAGAAACTAGATAACTT
CGATGACAGCAACAACGCCACCTGGCAGGATCGAATCTATATCAACAACA
AGTACTTCGTTGATGGCTCTCCCATCTTTATCTACTTGGGCGGCGAGTGG
GCTATCGATCCTAGTGGGATTACCTCTGGACTATGGAAGGACATTGCTAA
GCAGCACAACGGCTCCCTTCTCTACACTGAACATCGCTTCTTTGGCCAGA
GTATCCCTATAACTCCTCTGTCCACTGAGAATTTGGCCAAATACCAGAGC
GTGGAGCAGGCCCTGGCTGATGTGATTAACGTGATTGCCACGCTGAAGCA
GGAGGACAAGTACAAGGACTCCAAGGTTGTGGTCTCTGGTTGCTCCTACT
CGGCAACCATGGCCACCTGGATCAGGAAGCTCTATCCGGAAATCATCAGG
GGCAGCTGGGCCTCGTCTGCACCACTCCTGGCTAAGGTGAACTTCAAGGA
CTACATGAAGGTGGTCGGCGAGTCGTACGCTACCCTTGGAGGACAATATT
GCTATGATCTGATCGATAACGCCACCTCGTACTATGAAAATCTGTTCGAG
ATTGGAAATGGCACTCACGCTGTGAAGGAATTGAACTTGTGCTCCAACTT
TAATGTAAACAGCGAACAAGACCGTTGGCAGATCTTCAGCACTATTGCAA
ACATTTTTGCTGGCATTGCTCAGTACCAAAAACAGAGAATATGATATACC
CACCTACTGCTCGATCCTGAAAAAGGTCAATGACGAATGAATCTTGCTTG
CTTTTGTTCCAGTTCATTAATTTGGAAAAATACAATGAAGAATTCCGGAA
CATTGCCTTAACACCGAACCCTT
FMO14138.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3739-RB | 1586 | CG3739-RB | 17..1014 | 10..1014 | 4595 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19393904..19394371 | 414..881 | 2325 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19393376..19393597 | 10..231 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 19393660..19393841 | 232..413 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 19394435..19394483 | 888..936 | 185 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:23:40 has no hits.
FMO14138.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:02 Download gff for
FMO14138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3739-RB | 8..1010 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:01:32 Download gff for
FMO14138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3739-RB | 8..1010 | 1..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:01:32 Download gff for
FMO14138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19393367..19393597 | 1..231 | 98 | -> | Plus |
| 3R | 19393660..19393841 | 232..413 | 100 | -> | Plus |
| 3R | 19393904..19394371 | 414..881 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:02 Download gff for
FMO14138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15219089..15219319 | 1..231 | 98 | -> | Plus |
| arm_3R | 15219382..15219563 | 232..413 | 100 | -> | Plus |
| arm_3R | 15219626..15220093 | 414..881 | 99 | -> | Plus |
