FMO14139.5prime Sequence
1011 bp (914 high quality bases) assembled on 2014-07-11
> FMO14139.5prime
TCAGTCGACATGTCTCTCCAGTTGAACGGCGGCAGTGACATCAGCAGCAG
TGGCACCTCCAGCAGCAGCAGCAACAACAAGGAGTCGTCCCCCAGGACCA
CCAGGACGCCCAGGACACCGCAGACACCGCAGACGCCACAAACGCCGGCC
AGCGGAGTAGCTGCATCTGTGGCAGAGACGCCACACAGCTGCATTCGGCA
GGGCAACTGCGTCAAGGCCAACCAGGTTAAACTTTCCACGCTGCACGAGT
CCAAGATTTCTCCGAGGACTCCGCCCGTTACACCGGACTCACCCAGTACC
TATCTGGACGATGATATAGACTCGATGTACTCGTTCGCTACCACCACTTC
GGGTCGCTCCACGATGTCCTGCGAGCATCCCTATGTGGCCAGGAACGGCA
CCACCTTCAGTGGTCGCAAGATGAAGTACGTCGTGCATTGCTCCAACTAT
GCGGGTCAGGTGGGACCCGATTATCTGACGCCCACGCAGCGGGCACAGCG
CCAGATCCGGCGGCTCAAGGAGCTGCTGTGCATCGCGCGACAGGATCTGG
AGCAGAAGGATACGGAGCTGCTGCGTCTGACGCGCGAGGTGGTGGAGCTG
CGCCTGTTCAAGGCATCGCTCAGTTCGCCGGAGGAGCGTTCGGCCTCCTC
CGATGCGGTCACCGTGCGTGAGGCGGAGCTGAAGACCTCGCAGGATGTCT
CGCCCATCGTCGACATGGTGGACGAGGGCAACGCAAAGGGCAGTCCACGC
CATCTAAGCCGCCAGCAGCAGCAGCAGGCGAACCACTCACTGCAGGCCAT
GCAGATGTCGGCGGAGATGCAGAGCTCCTACGCGGACTCCGGGCCATTTC
GAGGACCTAACCATGTCGTCGGTGCACTCGAAGGACTCGCAGACGAGAGC
GAGGCATGGCGGCACAGCCACGCCCGATGGAAAACCGGATGTGGGGATGG
CGGAGAGGCGGGTGATTCTCCCGCCAATCTGGGGACATCCAGCTGGAGCG
CACGGGACTGT
FMO14139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qtc-RK | 1983 | CG14039-RK | 58..1027 | 10..982 | 4595 | 98.6 | Plus |
| qtc-RN | 1890 | CG14039-RN | 58..1027 | 10..982 | 4595 | 98.6 | Plus |
| qtc-RH | 2017 | CG14039-RH | 208..1177 | 10..982 | 4595 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5067307..5067860 | 391..945 | 2600 | 99.1 | Plus |
| 2L | 23513712 | 2L | 5066869..5067250 | 12..393 | 1910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-29 00:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2985 | 25..207 | 222 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6901 | 6..215 | 183 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6902 | 25..133 | 171 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6923 | 25..145 | 164 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6917 | 25..207 | 159 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6936 | 25..183 | 156 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2399 | 25..80 | 154 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6901 | 43..221 | 154 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6924 | 25..190 | 154 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1156 | 30..83 | 153 | 75.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2492 | 28..224 | 148 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..7037 | 25..225 | 144 | 55.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1039..1161 | 17..138 | 143 | 61.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1137 | 25..79 | 140 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2492 | 27..80 | 135 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2754..2967 | 16..222 | 134 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2488 | 33..193 | 127 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2419..2474 | 25..80 | 127 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2611..2808 | 25..222 | 127 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1573 | 39..79 | 124 | 78 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8617..8672 | 34..88 | 124 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2426 | 39..80 | 120 | 76.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1128 | 29..79 | 119 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2461..2540 | 25..103 | 118 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2650 | 25..79 | 115 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6872..6944 | 33..102 | 115 | 64.4 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 647..690 | 71..28 | 112 | 72.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2537 | 39..80 | 111 | 73.8 | Plus |
FMO14139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:03 Download gff for
FMO14139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qtc-RH | 202..1163 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:01:36 Download gff for
FMO14139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qtc-RH | 202..1163 | 1..968 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:01:36 Download gff for
FMO14139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5066862..5067249 | 1..392 | 98 | -> | Plus |
| 2L | 5067309..5067881 | 393..968 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:03 Download gff for
FMO14139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5066862..5067249 | 1..392 | 98 | -> | Plus |
| arm_2L | 5067309..5067881 | 393..968 | 98 | <- | Plus |
