FMO14141.5prime Sequence
1034 bp (916 high quality bases) assembled on 2014-07-11
> FMO14141.5prime
TCAGTCGACATGAATCCGAAACCAACAACTACCAAGCTGGCCGAAATTGA
GCAGTTTTTGTTGGATGTCCGCGCCCACTTCCGAGCCTCGCTGGAGACCT
CGGAGTACGAGAACACCTCGAACCTATTCCATGTGACGGCCGCCGAGCAG
ACCGCCGCTCTTCTGGCCCGCTGCGAGATCCTGCTGGCTGCAGCCAGTTC
TGCATCGGGATCGGGATCGGGACTGGAACTGGGATCAGGGCTGGGATGCG
CAGACGAGCAGGCGGCAGCTAACCATCGTTCCAGCCTGGTCGACTGTGTC
GATAGCAAGGTGGGCGCGGAGACCGGTCCCAGCGGTTATCTGGAGATGCT
TGCCTCCCCGTCACCCTCGAAAAGCTCACTGTCCGCCTCGCGGGAGTACA
TTGATTTAGGCAGCAGCGGATCCCTGGATCGTTGCTCCGTCAATCAACCG
GTTCCGGCAGCGAAGGACAAGGAGCCACATCAGCAGCTCTACGAGATTTG
CCAGGGCCAGGGAGCGGGCCAGGACGAGGATGAGGCGCAACAGGCGATCA
CCTTCACCCACGAGGTGTTCATTGACTGCCCCTATGCAGATCTGCCCGCT
GGCCACTTGTCCCTGCAGAGGTCAACAAAGTACGGACAGCTGCAGAGGAT
TGTGCCCAAGCGGCTGTTCTTCGACCAGACCCGCAAGTGCTACTGTGGCA
TCCTCAACGATTGGATGCTGTGCTATGCCGACGGCCCGACCGCCTGTCGA
CCCAGCAGCACGCTCTACTTGAAGAGCTCCTCCATCGAGATTGAACACTT
CGGAGAGGGGAAGCGGCGCGACATCTGCTTTCAGATCACAACAGACGACC
CCAACAGAAGTTCGTGTACCAGGCACACGAAGTCGATGCCAAGAGTGGAT
ACACCGCATTGAGGCGGCATCGCGGGATGCTGGTGGCCTCATTTCAGCGG
TTAAGACTCCACCGCCCGGAACTGCCCACGCCGCCCGGTCCAAGAAATCA
CCCTTACAGCAACGAATCTTCTACAGGGAGCCCT
FMO14141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blow-RD | 2612 | CG1363-RD | 375..1411 | 9..1034 | 4520 | 96.6 | Plus |
| blow-RA | 2632 | CG1363-RA | 395..1431 | 9..1034 | 4520 | 96.6 | Plus |
| blow-RB | 2270 | CG1363-RB | 89..1069 | 65..1034 | 4240 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7581742..7582354 | 985..380 | 2430 | 94.6 | Minus |
| 2R | 25286936 | 2R | 7582614..7582929 | 379..64 | 1565 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7585056..7585111 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:23:56 has no hits.
FMO14141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:07 Download gff for
FMO14141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blow-RA | 387..1397 | 1..1002 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:01:46 Download gff for
FMO14141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blow-RA | 387..1397 | 1..1002 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:01:46 Download gff for
FMO14141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7581723..7582354 | 380..1002 | 96 | <- | Minus |
| 2R | 7582614..7582928 | 65..379 | 99 | <- | Minus |
| 2R | 7585056..7585118 | 1..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:07 Download gff for
FMO14141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3469228..3469859 | 380..1002 | 96 | <- | Minus |
| arm_2R | 3470119..3470433 | 65..379 | 99 | <- | Minus |
| arm_2R | 3472561..3472623 | 1..64 | 93 | | Minus |
