FMO14142.5prime Sequence
1046 bp (942 high quality bases) assembled on 2014-07-11
> FMO14142.5prime
TCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGCATGTGGC
CCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTGGAGACGG
TCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTCGCTGTCC
AAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGGGCAACAT
CGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTAGCTATCA
AAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGACGGACATT
ACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAACAGATCTT
CTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCCCAGTGCG
ACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGATGGCAAG
GATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGTTGTGGCG
ACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAGGGCAAGA
AGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGCTGGACGT
GGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATACGCGCGA
ACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATGCCCAACA
ACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGCCGGATAC
GGAATTCAGCTAGTCAAATACAGACTGTGGGCGAGGCTGACATCGATTTG
CGGCATAGCACTCTCGATGCGCACCACCAAGTTGTCGGTATATCCAAGAC
GTAGATACAGTAAGCCTTATATATGCTTTCGCATTTGAGAATAACAGTAA
TGTCACAAGCAACGCGTGCGATGCAGATTATGGGAGTGTACGAAAACACG
TCCGCCCGTCCTAACTCGATCGAATTGAACCGAGCTATCAGTCCGAAGAG
AAACGAATGTAGCACCTTCGAGCAGCCTTCCCCCCGAGATGGTATA
FMO14142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-RD | 3118 | CG4636-RD | 363..1405 | 9..1042 | 4655 | 97.3 | Plus |
| SCAR-RF | 3037 | CG4636-RF | 363..1213 | 9..857 | 4205 | 99.8 | Plus |
| SCAR-RB | 2815 | CG4636-RB | 261..1094 | 9..841 | 4130 | 99.8 | Plus |
| SCAR-RF | 3037 | CG4636-RF | 1212..1324 | 929..1042 | 290 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10977961..10978706 | 9..754 | 3730 | 100 | Plus |
| 2L | 23513712 | 2L | 10978880..10978985 | 755..858 | 415 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:24:00 has no hits.
FMO14142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:08 Download gff for
FMO14142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RD | 359..1366 | 6..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:01:50 Download gff for
FMO14142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RD | 359..1366 | 6..1001 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:01:50 Download gff for
FMO14142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10977957..10978706 | 6..754 | 99 | -> | Plus |
| 2L | 10978880..10978981 | 755..854 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:08 Download gff for
FMO14142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10977957..10978706 | 6..754 | 99 | -> | Plus |
| arm_2L | 10978880..10978981 | 755..854 | 98 | -> | Plus |
