FMO14143.5prime Sequence
1017 bp (931 high quality bases) assembled on 2014-07-11
> FMO14143.5prime
TCAGTCGACATGGCACAAACGAGCTCCATGAAGTTGCTGGGCGCCCGCAA
CATGTCCTGCATTGTGGAGCGTATGGAGTGGAACAACAAGATGGATCTAA
TTGCCTACGGAACGGAAAAGGGTGAGGTGGTCATCCAGCGTCTGAACTGG
CAAAAGATTGTCACCTTTCCCACGCCCGGCGAGGATGTGCGGGTGCGTTC
GCTCAGCTGGCAAATGGACGAGACACTCCTGGCGGTTGGCTACAGCAACG
GCAAGGTGGCGCTCCTGGACGCCGAGAGCGGAACGATAATATCAGGCCTC
ATTTACGAGGACGACATCAAGAAGGTCTACTTCAGCAAGGCCATCAACTC
GCAGGAGAACCTAGGAACTTACACATGTAATGTCAAGGATAAACACCGAA
GGTTCCTGCCCAAACTGCAGCCAATGACCAATATTGATCCGTGCCTGAAA
ACCCTGGACCAAAAGTCCTTTCCAAAGGGATCACCTTGCTTTCTGGTGGT
GATAATGCGCAGCGGCAAAGTGCACCTACTGCTCCTAGGAGCCCTGCAGG
CGGGCAGCATCGATCTCACACAGCACATTCTGCATCCGCACGAGTTCGAT
GTGTACGATGTGAGGATGAACGGAGACTGTAATGCCATTTATGCTCTTTT
GCGGGACGGTCAGGAGCTGATATTGCTGCACTTTCAAAACCAGGTGCTGC
AGATTGCATGGCACCCATGCTGGAGCTGGCAACGCATTGTGCCCACATCC
TAGAAACCAAAAACTATATTAATGACACGCAACAATGTTTGACGGAGGCC
TGGGAGACCGTGCAGTTGGAAATGGACATAAGCTAACCAGGTACGCCATT
CCCAGCCGTACGGAGTGATATCTGCCATTTTTCTGGAGCTGCACGTCTTT
GGATCGCTACTCGAGTAGAGGAGTTTTTGTCGAGACTCTTCCGAAAGGTT
CCAGAAGAATTGCCACTCGGTGAACCTTATTTTAGCCATCTGCCGAGCTT
ATTTCAGGCACTGAAAT
FMO14143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC4-RA | 2617 | CG32707-RA | 124..1145 | 10..1015 | 4575 | 97.5 | Plus |
| APC4-RC | 2605 | CG32707-RC | 118..1133 | 10..1015 | 4510 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9083538..9083941 | 361..763 | 1970 | 99.8 | Plus |
| X | 23542271 | X | 9083240..9083484 | 121..365 | 1225 | 100 | Plus |
| X | 23542271 | X | 9083054..9083170 | 10..126 | 585 | 100 | Plus |
| X | 23542271 | X | 9083999..9084141 | 764..904 | 585 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:24:04 has no hits.
FMO14143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:09 Download gff for
FMO14143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC4-RA | 124..1078 | 10..953 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:01:54 Download gff for
FMO14143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC4-RA | 124..1078 | 10..953 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:01:54 Download gff for
FMO14143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9083054..9083165 | 10..121 | 100 | -> | Plus |
| X | 9083241..9083483 | 122..364 | 100 | -> | Plus |
| X | 9083542..9083941 | 365..763 | 99 | -> | Plus |
| X | 9083999..9084176 | 764..934 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:09 Download gff for
FMO14143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8977087..8977198 | 10..121 | 100 | -> | Plus |
| arm_X | 8977274..8977516 | 122..364 | 100 | -> | Plus |
| arm_X | 8977575..8977974 | 365..763 | 99 | -> | Plus |
| arm_X | 8978032..8978209 | 764..934 | 94 | == | Plus |
