FMO14146.5prime Sequence
870 bp (831 high quality bases) assembled on 2014-07-11
> FMO14146.5prime
TCAGTCGACATGGCGAGTCTTGGGGGCCAACACGGAAATATTTCGACTAA
TCCAGAAGTGGAAAACACAGCCAAGCGACCCGAAAGTCGCGAGGGCAGCG
CCGAGCGAAAAGACCGTGAGGAGAAACTAAAATATGCCCGCGATCGCCAA
AATGAGGAGCGCCACCGGAAAATCGAGGAACTGCGTGCCCAGGCGGAGGC
CGCCCAGCGGTACCGTGAACAAAAGGAGGAGGAGCGCCGTCGACGCATCG
AGGAGATCCGTACCCGGGACACAGAGAAGCGCCACCAGGTGGAGGAGCGC
AAGAAGGCCATTTTCGAGGCCGAGAAGGAGCGCCGCGAGTACATCCTCAA
AAAGAATCAGGAACGCGAGTCCCGGATAGAAGTGAAAAAACGGGACAGAA
ACTCCATCGGCTTCGCATTTGGCTCCTCGACTCCCCGCCTGCTGGATGTG
CCCGCGGATTATGGTCTGGTATCGCCCAGTGCCTTTTGGGGGTCAGCGGA
GGTCCACATCTATATCGAACGTAGCGGGCGCCTCGCTCACACGTCGAAGT
TCAGAGCGTGAACTTGCCGACAGTGGTGCTAAGAAGCGTGCCTCCTCATC
GACGGACCGACAAGATGGCTCGCGATCGGGAAATGCCACGCCCGGCGGAC
ACTTCAATAACTCAAGGCCCGGCAGCGCCATGTCCACATCGACAAACATG
TCCACATCCGGGCTGGTGCCCAGGCGACCGGGCAACGGCACCCCGGGAAA
CCGAGCCGCCAGTATCGCGGGACGGGCATGTCTCTCGAGGAGATTACAAA
CTCAGAGGGATCAGAAGCCGCCGTGAGGACGACAGCGCCTCGCCAATCCG
CACCAACGACCCCCAAACGG
FMO14146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-RH | 3878 | CG14998-RH | 49..911 | 10..869 | 4010 | 98.3 | Plus |
| ens-RB | 3887 | CG14998-RB | 49..920 | 10..869 | 3910 | 97.3 | Plus |
| ens-RC | 3833 | CG14998-RC | 103..866 | 109..869 | 3515 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4131955..4132207 | 361..109 | 1265 | 100 | Minus |
| 3L | 28110227 | 3L | 4131748..4131892 | 503..358 | 680 | 99.3 | Minus |
| 3L | 28110227 | 3L | 4126989..4127163 | 790..617 | 655 | 96.6 | Minus |
| 3L | 28110227 | 3L | 4131120..4131238 | 618..500 | 595 | 100 | Minus |
| 3L | 28110227 | 3L | 4133769..4133824 | 112..57 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 4134454..4134502 | 58..10 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:23:25 has no hits.
FMO14146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:56 Download gff for
FMO14146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RH | 41..911 | 3..870 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:01:13 Download gff for
FMO14146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RH | 41..911 | 3..870 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:01:13 Download gff for
FMO14146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4126989..4127162 | 618..790 | 96 | <- | Minus |
| 3L | 4131121..4131236 | 502..617 | 100 | <- | Minus |
| 3L | 4131750..4131889 | 361..501 | 99 | <- | Minus |
| 3L | 4131956..4132203 | 113..360 | 100 | <- | Minus |
| 3L | 4133769..4133822 | 59..112 | 100 | <- | Minus |
| 3L | 4134454..4134510 | 3..58 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:56 Download gff for
FMO14146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4131956..4132203 | 113..360 | 100 | <- | Minus |
| arm_3L | 4133769..4133822 | 59..112 | 100 | <- | Minus |
| arm_3L | 4134454..4134510 | 3..58 | 93 | | Minus |
| arm_3L | 4126989..4127162 | 618..790 | 96 | <- | Minus |
| arm_3L | 4131121..4131236 | 502..617 | 100 | <- | Minus |
| arm_3L | 4131750..4131889 | 361..501 | 99 | <- | Minus |
