FMO14149.5prime Sequence
1018 bp (897 high quality bases) assembled on 2014-07-11
> FMO14149.5prime
TCAGTCGACATGGAAGAAAAGGTTCTGCCGAAATTCGTATTACCGTCTCC
AAAGTTCGGCAAGCCCAATGGATCCACCACATCCAATCACCTCTACCTGA
CCCCCAGCGGGATGACCCTGCTGCCGCGCTCCAAGCAACCGCCGCCCATG
TACGGTGCACGAGGATCAACAGTGCCAGCTAAATATCTGCACCAAGAACA
AAGCAGCCCAGTGAGCGTACCTGCATCCCCGCCAGTTTACCATTCTCCTC
CGCGACCGGAATTTTGTCACACATGTGTCATGGAGCTGGCCAACTCTCAG
GATATGAAACTCCACCTGGAGCAACACGAGTTCTGCCCTGCCGATGACTG
CGACTTTGCGGCGCTCCACAACATCCTGGAACGTCACATAGAATCCAATC
ACATCACAGGAACCTACGTAAAGGTAAAGAAAGTTTGGTCCGAGGAAGAA
TTGGCCGCTTGGAGGGCAGAACGAAGAAAAAAATTTCCCACTGCGGCCAA
TGTTGAGCTGGCTAGATTAGCCAAGGAACAGCGAATTAAACGCGGAGAGC
GCCTGGAGGCTTCGAAATCTCGCTTCGGAAACCGGGAAGATCGCCAACGG
ACGCGAGGAGGACCCCAGGGAGATCACAAAGTTCGTTTCGATCCGAAAAA
CAAGAAAAAGAGATGTGCCAAAGGGAAAGCCAATGAAAAGAAGAAAAAAC
GTGTTGGTACTGATAAAGCAAACGAAGCTTTGAAGCAGAAAGAAACTAAT
GAAGATAAAAAGAGAGGAGTTAATTTGTGCTCCCTGGAAATGCTAATTTG
GAGGACTGGACAATGCCGGAGTACCAGCACTTTAAGCAAAGTTCAAAGAC
ATAATGCTTTGTCTAGCTTTCTTGGAATGTACGGTCAGATAGTGACGAGA
AGTGAGCTGAAGTGATGATCAGAATAAGCGACTGCAGTAACAATTCCCAG
CCAGTAGAAGCTCCAAGAATGCCATTCTGAATTCACAGAATGGTCCAGCC
CTGAAGCTTCGATAACCT
FMO14149.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nufip-RA | 1640 | CG4076-RA | 56..1087 | 6..1010 | 4340 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18747290..18747718 | 898..483 | 1560 | 95.8 | Minus |
| 3L | 28110227 | 3L | 18747776..18748056 | 482..202 | 1375 | 99.3 | Minus |
| 3L | 28110227 | 3L | 18748117..18748312 | 201..6 | 965 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:24:23 has no hits.
FMO14149.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:17 Download gff for
FMO14149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nufip-RA | 52..1037 | 1..964 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:13 Download gff for
FMO14149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nufip-RA | 52..1037 | 1..964 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:13 Download gff for
FMO14149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18747776..18748056 | 202..482 | 99 | <- | Minus |
| 3L | 18748117..18748315 | 1..201 | 98 | | Minus |
| 3L | 18747196..18747718 | 483..979 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:17 Download gff for
FMO14149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18741217..18741415 | 1..201 | 98 | | Minus |
| arm_3L | 18740876..18741156 | 202..482 | 99 | <- | Minus |
| arm_3L | 18740296..18740818 | 483..979 | 94 | <- | Minus |
