FMO14152.5prime Sequence
889 bp (780 high quality bases) assembled on 2014-07-11
> FMO14152.5prime
TCAGTCGACATGCTTGCGTTGTTGGCAAGCGGATCGAGCAGAAGCAGCAG
CAACAACAAACTGGCCGAATCGGAAAACTCAGCGCAAAACTCCAACAACA
TGAGTTGGGGCACCGAGCTATGGGATCAAAACGAGAATCTGGCGATACAC
ACAAACAGAGGCATCGATGCTCTGGACAAGTTTGCCAACTTCTTACGCGA
TCGAGTGGCCATAGAAACGGAATATGCCGGCAAATTAAGGCGCCTAGTGA
AAAACTACCAGCCCAAAAAGAAGGAGGAGGAAGACAATGAATTCACATCG
GTGCAAGCGTTCCGCAATCTGCTCAAGGAGGTGGGCGATCTGGCGGGACA
GCGCGAGGTGGTGTCCGAGTCCCTGCAGCTGCAGATCATTGCGGGAGTGA
CGCTTCTGTCCAAGACATTGCGCGAGGAACGCAAGAAATGCCTTAGCGAT
GGTGCCACCCTGCAGCAGAACCTCACCACACAGCTCTCCTCGCTGGACCG
GGCCAAGCGGAACTACGAGAAGGCCTACCGTGACTCGGAGAAGGCGGTGG
ACAGCTATAAGCGGGCAGACATGGGACCTCAATCTCAGCCGGGGCCGAGG
TGGAGCGCTACAAGAACGTGATGACGTCCAAGATCCAGCAGTCGGACGAT
GCGAAGAACGAGTACGCTAACCAGCTACAGAGACGACATCTGCAGCAGCA
CACTACAGCATGCTGCTGCCTCGGTCTCATCGGCTGCAGAGCTGACGAGA
AACGCACCCGTGCTTCAGGAGTCATTGTGGGAGCGCGATGTGAGTCATCG
TGCGCATCATAGCCGCTGCATGGAGGTATCGTGAGCGGCGAGTCATCACG
AAAGAGATACCTTCAGTCTAAGAAGATTTCATTCTGGTT
FMO14152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cip4-RE | 2504 | CG15015-RE | 103..1012 | 10..889 | 3690 | 95.8 | Plus |
| Cip4-RC | 2468 | CG15015-RC | 103..1012 | 10..889 | 3690 | 95.8 | Plus |
| Cip4-RG | 3507 | CG15015-RG | 103..1012 | 10..889 | 3690 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4327416..4327704 | 720..434 | 1175 | 97.6 | Minus |
| 3L | 28110227 | 3L | 4327773..4327917 | 435..291 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 4338066..4338183 | 240..123 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 4363026..4363127 | 124..23 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 4336269..4336321 | 290..238 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:24:34 has no hits.
FMO14152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:23 Download gff for
FMO14152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RG | 103..964 | 10..848 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:27 Download gff for
FMO14152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RG | 103..964 | 10..848 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:27 Download gff for
FMO14152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4327267..4327702 | 436..848 | 93 | <- | Minus |
| 3L | 4327773..4327917 | 291..435 | 100 | <- | Minus |
| 3L | 4336269..4336319 | 240..290 | 100 | <- | Minus |
| 3L | 4338067..4338182 | 124..239 | 100 | <- | Minus |
| 3L | 4363027..4363127 | 23..123 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:23 Download gff for
FMO14152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4327267..4327702 | 436..848 | 93 | <- | Minus |
| arm_3L | 4327773..4327917 | 291..435 | 100 | <- | Minus |
| arm_3L | 4336269..4336319 | 240..290 | 100 | <- | Minus |
| arm_3L | 4338067..4338182 | 124..239 | 100 | <- | Minus |
| arm_3L | 4363027..4363127 | 23..123 | 100 | <- | Minus |
