FMO14155.5prime Sequence
953 bp (849 high quality bases) assembled on 2014-07-11
> FMO14155.5prime
TCAGTCGACATGCAGGTGGAGCCTCAGGGAGTTCCAACGTACAGCGATAA
ATTGCCGCCTGATACTCTTTGGTTTAGGTACCCCGTTAATCAAACAAATG
GCACAAAGCCGCCAGAGGGAATCAAGACGTATGCCTACGTGTTTCGAGGA
CAGGTACACGATGTGGATGAGAACGAAATCGATCTTAAGGCAACGTTCGA
TCCGGAGGTATTTTTCAATATTATCCTGCCCCCAATTATCTTTTATGCGG
GCTATAGCTTGAAAAAGAAATACTTCTTTCGCAACTTGGGTGCCATACTT
ACGTTTGCCATTGTGGGCACGACTTTGTCGGCCTTCCTAATCGGAGGCTT
CATGTACGGCTGTGTGAAACTGATGCCAAAGTACTTGAGTAGCAGTTTCA
CATTCCTGGACTCCTTATACTTTGGAGCTCTGATATCGCCCACAGATCCG
CTCACCATTCTAGCCATATTCAACGATCTTAGGGTCGACGTAAACCTATA
TGCGCTAGTCTTGGGCGAATCTGTGCTCAACGATGCCGTGGCCATAGTCC
TTAGTGGAGCCATTCAAAATTATGGTGAACACTATTCCAATACCGGGGAA
TTCGAAACTACAGCTTTTCTACGCTCGTTGAGCGATTTCTTCTCCATCTT
CTTACTATCCCTGATGATTGGCGCGGCCATGGGATGCTTGACAGCATTGA
TGACCAAATTTACTCGGGTTCGAGACTTTCCTTTGCTAGAATCCGCGCTC
TCGTGCTCATGAGCTACAGCACCTTCCTGCTGGCTGAGCTACGGAACTTA
CTGGTGTGTGGCCGTGCTCTTCTGCGCATCTGCAAGCTCACTAACACGTA
CAACACTTGTCGGAGGGACTCGCCGCCAAAGAACAAAACAGAAAATCGAG
CTCCCTGAACTTTCTAGCCGAAAAATTTTATATTTTTCCTACATTGGCGT
ATC
FMO14155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nhe3-RJ | 3001 | CG11328-RJ | 683..1632 | 4..953 | 4375 | 98 | Plus |
| Nhe3-RI | 2605 | CG11328-RI | 183..1132 | 4..953 | 4375 | 98 | Plus |
| Nhe3-RG | 3344 | CG11328-RG | 683..1632 | 4..953 | 4375 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6682141..6682432 | 557..266 | 1460 | 100 | Minus |
| 2L | 23513712 | 2L | 6682495..6682684 | 267..78 | 950 | 100 | Minus |
| 2L | 23513712 | 2L | 6681941..6682085 | 701..557 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 6681519..6681772 | 953..700 | 610 | 93.1 | Minus |
| 2L | 23513712 | 2L | 6682746..6682820 | 78..4 | 360 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:24:46 has no hits.
FMO14155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:28 Download gff for
FMO14155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nhe3-RG | 681..1632 | 1..953 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:34 Download gff for
FMO14155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nhe3-RG | 681..1632 | 1..953 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:34 Download gff for
FMO14155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6681941..6682084 | 558..701 | 100 | <- | Minus |
| 2L | 6682495..6682683 | 79..267 | 100 | <- | Minus |
| 2L | 6682746..6682822 | 1..78 | 96 | | Minus |
| 2L | 6682141..6682430 | 268..557 | 100 | <- | Minus |
| 2L | 6681519..6681770 | 702..953 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:28 Download gff for
FMO14155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6681941..6682084 | 558..701 | 100 | <- | Minus |
| arm_2L | 6681519..6681770 | 702..953 | 93 | <- | Minus |
| arm_2L | 6682141..6682430 | 268..557 | 100 | <- | Minus |
| arm_2L | 6682495..6682683 | 79..267 | 100 | <- | Minus |
| arm_2L | 6682746..6682822 | 1..78 | 96 | | Minus |
