FMO14156.5prime Sequence
938 bp (846 high quality bases) assembled on 2014-07-11
> FMO14156.5prime
TCAGTCGACATGGCCTGGCGATTCAAGGCTTCCAAGTACAAAAATGCCGC
ACCCATTGTGCCCAAGGCGGAGGCATGCGTCCGCGAGATCTGCGTGGGCA
GCTACCAGACGTACGGTAACAACATCGCCGCCTCCGGCGCCTTCATGGCC
TTCAACTGGGAGCACACCGGGTCCAGCGTCGCTGTCCTCCCGCTGGACGA
CTGCGGCCGGAAGAGCAAGACCATGCCGCTGCTCCATGGACACACGGACA
CAGTGACGGACCTTAAGTTCTCCCCGTTCCACGACGGGCTGCTGGCCACC
GCCTCGCAGGATTGCCTGGTCAAGATCTGGCACATACCGGAAAAAGGTCT
GGAGCAGTCGCTTTCCGATCCGGAGGCAATCTTCTCACACAAGCAGAGAC
GCGTAGAGACAGTGGGCTTCCATCCAACAGCAGATGGTTTGATGTACTCC
ACAGCCGCCGGCTGCGTGGCTCTCTTCGATCTCAGCACTCAAAAGGAGAT
ATTCTCGAACAATGAGCACCCCGAGGTGATACAGTCGGCCAGTTGGCGCG
AGGACGGTTCTGTTTTGGCCACCAGTTGCAAGGATAAGAATGTGCGAATC
TTCGATCCCCGTGCCGCTGGTTCACCCATCCAGCTGACTGCTGAATCGCA
TCAGAGCATCAAGGATTCGCGGGTGGTGTGCTTAGGCAATCAGCATCGCA
TCCTGACCACTGGCTTCGATGCGGCCCGCCTGCGACAGGTGATCATCCGT
GATGTGCGCACTCACACTCAGAGAAACTCTCGAACTGACTGCTCGACGGC
ATATGATGCCCTCTTCGATCCCGACTCATATGCTTTCTAGCGAAAGGTGA
CCAACATTACTATTGGGATACGACAGATCGTATTGATGGAGGCTGGTGCA
TACTGGCGGCAAACAACGAGCTTGTTCGTGTCCAGACC
FMO14156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pod1-RG | 6374 | CG4532-RG | 315..1193 | 9..868 | 3905 | 97.5 | Plus |
| pod1-RF | 6031 | CG4532-RF | 315..1193 | 9..868 | 3905 | 97.5 | Plus |
| pod1-RD | 5837 | CG4532-RD | 354..1232 | 9..868 | 3905 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6805909..6806220 | 9..320 | 1560 | 100 | Plus |
| X | 23542271 | X | 6806881..6807135 | 506..760 | 1260 | 99.6 | Plus |
| X | 23542271 | X | 6806617..6806804 | 318..505 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:24:51 has no hits.
FMO14156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:30 Download gff for
FMO14156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pod1-RD | 346..1199 | 1..841 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:37 Download gff for
FMO14156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pod1-RD | 346..1199 | 1..841 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:37 Download gff for
FMO14156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6805901..6806218 | 1..318 | 98 | -> | Plus |
| X | 6806618..6806804 | 319..505 | 100 | -> | Plus |
| X | 6806881..6807209 | 506..825 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:30 Download gff for
FMO14156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6699934..6700251 | 1..318 | 98 | -> | Plus |
| arm_X | 6700651..6700837 | 319..505 | 100 | -> | Plus |
| arm_X | 6700914..6701242 | 506..825 | 96 | == | Plus |
