FMO14158.5prime Sequence
905 bp (844 high quality bases) assembled on 2014-07-11
> FMO14158.5prime
TCAGTCGACATGGTTCGCCGGGCATCGAGTGTTCCTCATCTGAATAGTAG
TGGCGGCAGCAGTGCGGACAGCGCCGGAACGTCGGGCAGTCGTCGTGGTC
GGGCTCCGGTGGCTGGCTCCCGCGGACGAAAGACGCCCTCGACCACATCC
ACCGGCCAGAGCCAGCGCCAGAGTTCCGGCAGCAGCAGCAGTATGCCACG
ATCACGAAGTCTGACCAATGGCATGCGTCGTCTTAGTCCACAAAAGGGGA
CTGGCAGTAGCGGTGGCACCGGTGGAGGAGGAGGTAGCTCCCGCAATACG
CCGTATTTCCTGCGTTCACGCGAGAATGAGATTGGTAGCGCTGACACGCT
GGAAATCGTGGCCTCCAAGTCCACGGGCAGCGAGGAGTGCTCAACGCCGG
AGGACAATATTAACGTGGTTGTAAGAGTGCGTCCTTTAAACGACAAAGAG
AAAAGGGATCGACATGGGTCCACGCTTCAGTTTCCTGGAAACGGCCAGGT
TATACTTGAAGGCAACGATGTGGGCCAGAAAAGGTCGCATAATCGCGATA
GTGTACGGGTTTTCACCTATAACGTGGTATTTGAGCCGGGAGCCACACAG
GAGGATATTCTGGACTACTCGGGTATAAAGCGCATCATTGAAATGGGCAT
CGAGGGTTTCAGTTGCACGGCTTTTTGTTACGGCCAAACGGGATCCGGCA
AAACGCACACCCTCACTGGACCCCCCGATTTGTTCGTTGGCAAGCCGAAT
CCCAGATCCGCGTCATGACTCATCTTCCGCTCGTTTTGTATCTCTCATGA
TAAGAATCGCAGGACGTCAAATTACGTGCTAAAAGCTCCTTCATGAAAAT
TCTACAATGGAGCGGGGTATTCGAATTTGTCAACCTGGAAGATGGCACCA
AAAAC
FMO14158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp54D-RA | 2278 | CG43323-RA | 184..1049 | 9..866 | 3995 | 98.2 | Plus |
| Klp54D-RB | 2359 | CG43323-RB | 184..1049 | 9..866 | 3995 | 98.2 | Plus |
| Klp54D-RC | 2238 | CG43323-RC | 184..1049 | 9..866 | 3995 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17557214..17557535 | 9..330 | 1610 | 100 | Plus |
| 2R | 25286936 | 2R | 17560727..17560954 | 505..732 | 1140 | 100 | Plus |
| 2R | 25286936 | 2R | 17560497..17560671 | 330..504 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:24:12 has no hits.
FMO14158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:12 Download gff for
FMO14158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp54D-RC | 175..1067 | 1..885 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:02 Download gff for
FMO14158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp54D-RC | 175..1067 | 1..885 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:02 Download gff for
FMO14158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17557205..17557534 | 1..329 | 98 | -> | Plus |
| 2R | 17560497..17560671 | 330..504 | 100 | -> | Plus |
| 2R | 17560727..17560954 | 505..732 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:12 Download gff for
FMO14158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13444710..13445039 | 1..329 | 98 | -> | Plus |
| arm_2R | 13448002..13448176 | 330..504 | 100 | -> | Plus |
| arm_2R | 13448232..13448459 | 505..732 | 100 | -> | Plus |
