FMO14159.5prime Sequence
947 bp (856 high quality bases) assembled on 2014-07-11
> FMO14159.5prime
TCAGTCGACATGTCGGTACACTATAAATTTAAGAGTACACTCAACTTTGA
TACAATTACTTTTGATGGACTTCACATTTCTGTCGGGGACTTAAAAAGGG
AGATTGTGCAGCAGAAGCGACTGGGCAAAATCATCGACTTTGATCTCCAA
ATAACAAATGCGCAGAGTAAAGAAGAATACAAGGACGATGGGTTCCTTAT
TCCCAAAAACACAACGCTGATCATATCGCGCATCCCCATCGCCCATCCCA
CAAAAAAGGGCTGGGAGCCACCAGCAGCAGAAAATGCCTTTTCGGCGGCG
CCTGCCAAGCAGGACAACTTCAACATGGACCTGTCCAAAATGCAAGGCAC
GGAGGAGGACAAAATCCAGGCCATGATGATGCAGAGCACAGTCGACTATG
ATCCTAAGACGTACCATCGTATTAAAGGACAATCGCAAGTGGGAGAAGTT
CCCGCATCCTACCGATGCAACAAATGCAAGAAAAGCGGACACTGGATCAA
AAACTGTCCCTTTGTGGGGGGAAAGGACCAGCAAGAGGTCAAACGGAATA
CTGGTATTCCGCGGTCTTTCCGCGACAAGCCAGATGCGGCTGAGAACGAA
TCAGCCGATTTTGTGCTGCCTGCTGTACAAAACCAAGAGATACCGGAGGA
TCTGATATGCGGCATATGCCGAGATATATTCGTCGATGCTGTCATGATAC
CCTGCTGCGGAAGTTCCTTTTGTGACGACTGTGTGCGAACCTCCTTATTG
AGTCAGAGGATAGTGAGTGCCCCGATTGCAAGAGAGACTGTCGCTGCTCC
TGATACCTAATCGTCTGAGAATCGTGAACGCCTTAAAATGAGACTGGTAT
AAACAAAGCGCGCCTAAGCAGCTGCAGTAAAATGAGGAAAAACCTCCTGT
TTGAAAAGAGTGGAGAAAGCAGTCTCCGGAGGTGACCGAAGAACTGA
FMO14159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snama-RA | 3936 | CG3231-RA | 119..1048 | 10..918 | 4080 | 97.2 | Plus |
| snama-RB | 1972 | CG3231-RB | 247..1176 | 10..918 | 4080 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24088065..24088437 | 411..782 | 1815 | 99.7 | Plus |
| 2R | 25286936 | 2R | 24087774..24088013 | 174..413 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 24087551..24087716 | 10..175 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:24:15 has no hits.
FMO14159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:14 Download gff for
FMO14159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RB | 247..1179 | 10..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:06 Download gff for
FMO14159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RB | 247..1179 | 10..922 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:06 Download gff for
FMO14159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24087551..24087716 | 10..175 | 100 | -> | Plus |
| 2R | 24087776..24088010 | 176..410 | 100 | -> | Plus |
| 2R | 24088065..24088543 | 411..871 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:14 Download gff for
FMO14159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19975074..19975239 | 10..175 | 100 | -> | Plus |
| arm_2R | 19975299..19975533 | 176..410 | 100 | -> | Plus |
| arm_2R | 19975588..19976066 | 411..871 | 95 | -> | Plus |
