FMO14161.5prime Sequence
989 bp (907 high quality bases) assembled on 2014-07-11
> FMO14161.5prime
TCAGTCGACATGAGCTTTCGTTCGTCTCCGCAGGGAAAGCCACACCCAAT
GACGGACTATCAGTCCATCCGGCCTTCCGAAGTGGAGCAGCTCTTCGAGA
AGAAGTTCCACTATCAGAAGCCGAAAGGAAACAAATCCTGGCAGTTGCCG
CCACCGGATCAGGCTCTCTTCAGTGAGTTCTACCAGTTCGAGGCGCTGCA
GGGACTGCGCGAGCAGCTGAATGCGGTTAAAAGCAAACTCAATGACTATG
GCGTGCAGGAATGGAGTGCTCACACCAACAGGCGTGACCCTTCTGGCGAG
GTGTCCTGGCGCCTGAAAAACGACACGAAGGCCGAATTTGTAACTGTGGC
ATGGTGCAAGTTGTTCGAGTGCCTGCATCGTTATCCATTGGTCACGAAGC
CGGCGGTCAACAGTATGCATCTCTGCGAGGCACCCGGTGCCTTCATAGCA
TCTCTGAATCATTACCTTCATAGCAAATATGAAAAGGATGAGATTAAATG
GCGCTGGCGCTCAACTACTTTGAATCCGTACTATGAAGGCAATGCTATAA
ACCAGATGATCAGCGATGACAGGTTCATCGTCCACACGCTGGACAACTGG
TTCTTTCACAAAGATCTAACTGGAAATCTACTAGATGTGGCCAACATTGA
CCACCTGGTGGAACGTTGTGAGGTGGAGTTCCAGGGACAGGTGGATCTTG
TCACTGCCGATGGTTCCATCGATTGTGCCGCACAGCCTGATTGCCAGGAA
GAGATAGTGGTTCGCCTTTTCTTTGCTGAAGTACTCAGTGCCTTAAGATT
CTCTCAAGTGCGGTAACTTCCTAGTGAAGATGTTTACCCTCTTCGAGGCT
TGCAGTGTATCTCTACTTTATACACTCAATGCATCTTTGAGGAGGTACCC
ATCTTTAAGCGGCTACTTCAGCGGGAATTCGAAGTGTATGTATTCTGCTG
AACTACACACAGGGACAATCTCCACTGCCTCGGCTTGCT
FMO14161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aft-RA | 2314 | CG5032-RA | 69..1051 | 10..982 | 4520 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17786299..17786740 | 51..492 | 2195 | 99.8 | Plus |
| 2R | 25286936 | 2R | 17786792..17787214 | 491..910 | 1950 | 99.1 | Plus |
| 2R | 25286936 | 2R | 17786203..17786244 | 10..51 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:25:03 has no hits.
FMO14161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:34 Download gff for
FMO14161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aft-RA | 60..998 | 1..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:50 Download gff for
FMO14161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aft-RA | 60..998 | 1..931 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:50 Download gff for
FMO14161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17786194..17786244 | 1..51 | 92 | -> | Plus |
| 2R | 17786300..17786740 | 52..492 | 99 | -> | Plus |
| 2R | 17786794..17787212 | 493..908 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:34 Download gff for
FMO14161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13673699..13673749 | 1..51 | 92 | -> | Plus |
| arm_2R | 13673805..13674245 | 52..492 | 99 | -> | Plus |
| arm_2R | 13674299..13674717 | 493..908 | 99 | -> | Plus |
