FMO14162.5prime Sequence
999 bp (899 high quality bases) assembled on 2014-07-11
> FMO14162.5prime
TCAGTCGACATGGACTATCTGTTTGGCGACTATTTGGATAGCATCACGAA
TACACCGAACACAGATCGTCGGGATTCATTGCCCATTAGCTTTAACAAAA
GGAAACGCAAGCGTTTTTCGCAACGCATCCAGCTGGAGGGTACTCCGTTG
GGTTCTGGTAAACGACGCTCCTCCGTTTCGGATGCCGGTCTATTGTCTGT
CTCAAATAGTTTATTCGATTGTACCACCAGTCCGGATAAACTGGAGTCGG
ACAAGCTGTTGCATGCCGAGCCGGAGGCGAGCGATGCCACTCCAGCCAAG
AAATCGATGCGCTTTAATCACTTTATGGACTTTTATACCACAGAGTCCAA
CTACGTGGGCATATTGGACACCATACTGAATCTTTTTAAAAACAAGTTGG
AAGAGTTGGCTGAAACCAATGATCCGCTGCTTAATAAGTCGGAGATCAAG
ACGATCTTTGGCAACTTCCTGCCTATCCACGAGGTACACCAAAGCATGCT
GGAGCATCTGCGGAAATTGCATGCTAACTGGCGGGAGGATTGTCTTATTG
GAGACATTATCATTCAACATCGCGACGAGCTGATAAAGGCGTATCCACCA
TACGTCAACTTCTTCGAGCAGATGAAGGAGCAACTGCAGTACTGCGATCG
GGAATATCCGCGTTTCCACGCCTTTCTGAAGATTAATCAAACGAAACCGG
AGTGCGGACGCCAAGGTCTACAAGATCTGATGATCCGTCCAGTTCAGCGA
TTGCCCAGTATCAGTCTGCTGCTAAATGATATATTGAAACATACGACAAG
TGGCAATGCGGACCACGGACGTTTGGAGGAGGCTCTGAAGCCATCAAGCA
GTGACACTGCACATCAACGAGGATAAAAGCGACCGAATCGCCGCATGGGC
CACTTCCATAAAATTCTACGATATTCGAAGGATGGTCCGGGCGCCATTTA
GTGAGGTTCAACCCGCAGCCTTTATTTTTTTAAATGGAAGTGAACGAGA
FMO14162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pbl-RF | 2598 | CG8114-RF | 280..1244 | 10..978 | 4445 | 98 | Plus |
| pbl-RE | 3318 | CG8114-RE | 1000..1964 | 10..978 | 4445 | 98 | Plus |
| pbl-RD | 4685 | CG8114-RD | 2367..3331 | 10..978 | 4445 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7897740..7898239 | 879..382 | 2400 | 99.6 | Minus |
| 3L | 28110227 | 3L | 7898303..7898653 | 381..31 | 1755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:25:06 has no hits.
FMO14162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:36 Download gff for
FMO14162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pbl-RD | 2359..3270 | 1..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:54 Download gff for
FMO14162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pbl-RD | 2359..3270 | 1..910 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:54 Download gff for
FMO14162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7897650..7898239 | 382..975 | 96 | <- | Minus |
| 3L | 7898303..7898653 | 31..381 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:36 Download gff for
FMO14162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7890750..7891339 | 382..975 | 96 | <- | Minus |
| arm_3L | 7891403..7891753 | 31..381 | 100 | <- | Minus |
