FMO14164.5prime Sequence
939 bp (848 high quality bases) assembled on 2014-07-11
> FMO14164.5prime
TCAGTCGACATGCCATACCATCGAGGCGGAGATGCCTCTTCCCAGGCCGA
CAAGCTGAGCGGCATCGTGGAGGAGAGCGATCTGTACGAAGGGTTCGCCC
CGCATGTCGAGACGTCCGAGATCAAAACCCTCGACTTCTACAATTTACCA
AAGCAAACTGGCAAGGAACCGGCACTGCGCTCCTACACGGAAATCCAGCA
GCTGCTGCAGCAGGGCAAGAAGCGCGACGTGAAGAACATACTCAGGGAGA
ACTCGTGGCCCATTAACTCCCCGATCCGAGCCCAGCTATGGCCGATGTTG
TGTGGCCAGCACCAGACCAAACAGCAAATGCTAGATGGCTTCTACTGGGA
GATGGTTCACCAGGTCTTTGGCACCACGGAGCTGTCGGAGAAGCCGATCA
TGCTGCCCGCCTTTGTGGATGCCACCCACTGTTTGCCCTACCACTTGACC
AGCACGGGACGAGCCGTGGCCGATCGCATCGTGAATGTCCTGGGCTACGA
CTGCCCCGATATTACCTACAGTCCAGTATTGTATCCCATTACATCGATAC
TTTTGCATTTCATGTCGGAGGAGGAGGCGTACATATGTCTGGCCGGTCTG
GTCGGTAGCAAGGAGAAGGTATTCATCAATCAAACCAAACTACAGCACGA
AGTCACTTGGAAGACGGTGATGCAGATAGCCAAAAAGCACACAAAAAGTG
CTACTTCGTATTTCCAACGTATTTGCCCGGGTCTGAAGCTAGAACGCATC
TTCATGGACTGTGCTGGTGGATTCTAGCCGGTCTACCCTTTCCAGCATCT
GGTGCGATCATGGACTGCTACTTCACGAGGGCATCAAGTCTGTACCGCGG
TGCTCGTCATACTCACTGTTTCACAGGAGTGCCAGTCGAACACGAATGGA
GTCCGGCAATATAACGACTTGGCACGCTTTGATCAGTTC
FMO14164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43739-RA | 4863 | CG43739-RA | 743..1685 | 10..935 | 4235 | 97.6 | Plus |
| sky-RL | 4921 | CG9339-RL | 687..1629 | 10..935 | 4235 | 97.6 | Plus |
| sky-RK | 5158 | CG9339-RK | 951..1893 | 10..935 | 4235 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20881987..20882194 | 568..361 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20882260..20882465 | 365..160 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 20903015..20903166 | 161..10 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 20877553..20877678 | 693..568 | 630 | 100 | Minus |
| 2L | 23513712 | 2L | 20877255..20877477 | 906..694 | 565 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:25:13 has no hits.
FMO14164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:38 Download gff for
FMO14164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RJ | 760..1712 | 3..939 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:03:03 Download gff for
FMO14164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RK | 946..1898 | 3..939 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:03:03 Download gff for
FMO14164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20877553..20877677 | 569..693 | 100 | <- | Minus |
| 2L | 20881987..20882191 | 364..568 | 100 | <- | Minus |
| 2L | 20882262..20882464 | 161..363 | 100 | <- | Minus |
| 2L | 20903016..20903171 | 3..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:38 Download gff for
FMO14164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20877553..20877677 | 569..693 | 100 | <- | Minus |
| arm_2L | 20881987..20882191 | 364..568 | 100 | <- | Minus |
| arm_2L | 20882262..20882464 | 161..363 | 100 | <- | Minus |
| arm_2L | 20903016..20903171 | 3..160 | 97 | | Minus |
