FMO14165.5prime Sequence
956 bp (852 high quality bases) assembled on 2014-07-11
> FMO14165.5prime
TCAGTCGACATGCGCTCACTTGAAGGCAGCCGTCGTCGACAGGTCGAGCA
GCTGCATCTGGTTCTGGAAGCGAAGGATCAGGATCAGGAGCTCAATACCC
GACAAGAGCAGGAGCAGTCAGTCGCACGGCCATCGATGGCCAACGAACGC
AAGCAGAGCAGTCCCAAGGTGGAGCTAACAAAGCTCAGTCACGACCTGAT
CGAGGAATGTAAACGCAGCCAGGAGGACTCGCTGCTGTCGCGCCACCTGC
GCCACGAACTAGAAAAGCTACCCCGCGATTCTCGTCGCGAGTTGGTGCGA
AAGCAGCGAAATGGCTGCGCGCCCCTCTTTATCGCCTGCAAACGAGGTGC
CGTGGACATCGCTGAGTATCTGATCACCATTTGCGAGGCGAACATCGAGC
AGAGGGGCCACTTCGAGGTGCCGGAGGACAATAGCTTTCACTATGTGTCG
CCACTATGGGCGGCCGTCGTTTCGGGGAAGTTGTCCATGGTCAAGTACCT
GGTACGTATCGGTTGCGACATCAATGCCACATCCGATTCGGGATCGACGC
CGGTGCGAAGTGCTTGCTACATGACCCACGTTGATATCGTCAAGTTCCTG
GTTGAAAACGGAGCAGACATCAAGCGACCCAACATCAATGGCGGCACCTG
CCTGATTAACTCGGTGCAGTCGGTGCAGTTGTGCTTGTATCTAGTGCGCA
AGGAGCAGACATTAATGCAAGGGACATTCAGGACAGACGGCGCTTCACTA
CGCAATCCAGGAGCACCGACTGGATACGACTAAACTGTTATTGAGCAGGC
GCAGACCCATATGCCAGAGTCGGTACGGTGACGATGCCCTCGACTGCCTG
CCTAAGGAGCACATCACATCTTCGACTTCTTGAAAAAGCAGCTGCACTAC
ACGCCTGCAGGCTCGCCGAAGCCCCCGACCTGAATGGGATCGAACGTTCT
CTCATG
FMO14165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| m-cup-RB | 3789 | CG11896-RB | 519..1459 | 10..941 | 4225 | 97.3 | Plus |
| m-cup-RA | 2815 | CG11896-RA | 519..1459 | 10..941 | 4225 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17147415..17147737 | 589..267 | 1555 | 98.8 | Minus |
| 3R | 32079331 | 3R | 17148637..17148894 | 267..10 | 1275 | 99.6 | Minus |
| 3R | 32079331 | 3R | 17146998..17147352 | 933..589 | 1165 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:25:16 has no hits.
FMO14165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:40 Download gff for
FMO14165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m-cup-RA | 519..1473 | 10..956 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:03:08 Download gff for
FMO14165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m-cup-RA | 519..1473 | 10..956 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:03:08 Download gff for
FMO14165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17148638..17148894 | 10..266 | 99 | | Minus |
| 3R | 17146977..17147351 | 590..956 | 93 | <- | Minus |
| 3R | 17147415..17147737 | 267..589 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:40 Download gff for
FMO14165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12972699..12973073 | 590..956 | 93 | <- | Minus |
| arm_3R | 12973137..12973459 | 267..589 | 98 | <- | Minus |
| arm_3R | 12974360..12974616 | 10..266 | 99 | | Minus |
