FMO14169.5prime Sequence
942 bp (855 high quality bases) assembled on 2014-07-11
> FMO14169.5prime
TCAGTCGACATGGACTCGAGTAGTCGGCGCAGTTTTTCTGGTGGAAGTGA
AAACGAGGGTGGACGGGGCAGCGACTACTATAGATCCAGGCCGGGGTCTC
GATACAGTCGATCCAGGTCGCGTTCCCGTGAGCGCAACCGCAGCCATGGA
GGAATCAGGCACCGGAACTCTCGCTCTCGAAGTCGGGATCGGGATCGGTC
GCCCGTGTTCAGAAACGATCAGCATCGCGGTGGTCGAGGAGGAGCTGGTA
ACGGGGACCCCGACCTTTACCACAGCCTGATCAACGACGACTACAGGGAT
CAGGATGAGCGCAACTACAACTCCAGGAGCAACTTTGAGAATCGTCAGTT
CCGGCGACATGATAGCTTCGACCGTCGGCATCGGGACCGAGATGGCGAGA
GCGATCGGGAGCTAAACGACTACGAGTACGAACAGCGCTCCCGCGACTTG
GACTCACGTGATCGTAGCTCCACGGACAGGGACTGGTATCACAACAGAAG
TCGGAGCAGGGAACACAGCAGACCCTGGAACAGAAACAACAATCACGACG
ACAGAAGCAGAAGCAACGAGCGAAACACGCGCCACCGAGATCACCGCATG
TACAACGGCGGTGGCAGCAACCATAATCGCGATCGAGATCGAGATCGGGA
TAGGGAGCAAGACCGTGAACGTGATCGAGATCGAGATCGGGATCGTGAGA
GAAGGGCTCCTCAGATTACGACAGCGATGAAGGCCACATGCGCAGGAACA
AATACCGATCCACCACTGAGCCCTCAATATTATTATAATCTTCGGTCTTA
CCAGGAAATGACCAGAGCAGATATTTATGAGCGGAGCTGATAACGGTGAA
CATTGGAGCAGCCGTGCATTCGCATATCCGGAAGACAGGGACAGATTCCA
TTCACGCGGTAATATCGTTTGTCGAGATTTAACTCCGATCTG
FMO14169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4887-RB | 3424 | CG4887-RB | 193..1117 | 10..937 | 4250 | 98.1 | Plus |
| CG4887-RA | 3331 | CG4887-RA | 193..1117 | 10..937 | 4250 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1173379..1173830 | 128..579 | 2260 | 100 | Plus |
| 2L | 23513712 | 2L | 1173884..1174130 | 579..822 | 1085 | 98.8 | Plus |
| 2L | 23513712 | 2L | 1173201..1173319 | 10..128 | 595 | 100 | Plus |
Blast to na_te.dros performed 2014-11-29 00:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porto1 | 4682 | Porto1 DOC5 4682bp | 1637..1696 | 510..569 | 118 | 74.2 | Plus |
FMO14169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:46 Download gff for
FMO14169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4887-RA | 182..1120 | 1..942 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:03:22 Download gff for
FMO14169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4887-RA | 182..1120 | 1..942 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:03:22 Download gff for
FMO14169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1173190..1173319 | 1..128 | 96 | -> | Plus |
| 2L | 1173380..1173829 | 129..578 | 100 | -> | Plus |
| 2L | 1173884..1174130 | 579..822 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:46 Download gff for
FMO14169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1173190..1173319 | 1..128 | 96 | -> | Plus |
| arm_2L | 1173380..1173829 | 129..578 | 100 | -> | Plus |
| arm_2L | 1173884..1174130 | 579..822 | 98 | -> | Plus |
