FMO14170.5prime Sequence
937 bp (838 high quality bases) assembled on 2014-07-11
> FMO14170.5prime
TCAGTCGACATGTTCAGGAGCAAAAATGAGGGGAACATTGTGTACAAATG
CACTGTGCGACTCCTCGATGACTCCGATGTCCTAGAGTGTGAATTTCAGC
CCTTCCATAAGGGAATATACCTATTGGAGTACTTGTGCGGTGAGTTGGAG
ATCAAGGAGAAGGATTACTTCGGTTTGCGATATGTTGACTCCTCCAAACA
GAGGCACTGGCTCGACCTGTCAAAATCAATTATTAAGCAATGCAAAGAAA
TGGATCCACTATTGTTTTCGCTGAGAGTAAAGTTCTACCCTGCGGATCCA
TTTCGACTGACCGGAAATGCACGGATTATGCTCTATCAGCAGTTAAAGAG
GGACCTTCGACATGGTCGCTTGTACTGCTCCTTGGGCGAGGCGGCTGCAC
TGGGCGCTCTAATAGTTCAAGAGGAGCTGGGCGACTATAACGAAGACGTG
CATGTGGGCAGTTACGTATCTTCCATAGAATTAGCACTGCGGCAGACGGA
GTGTCTGGAGAAGAAGATAATCGAGCTGCATAAGAAGCGAGAGCCCGGAC
AGAATCTCTCCCTGGCCATGGATGAGTTCCTGGGCATAGCTCGCGGCCTG
TAGACTTACGGCATAGATCCGCATCCGGTCAAGGATCACCGCGGATCGCA
GCAGTACGTCGGCATAAATAATACGGGCATTAGCACATTTGTGGGCCGGC
AAAAGATCTCAACATTTTCGCTGGAACGAAATACACAAATCAATTTCGAG
GGCAAATGTTTATAGCGCATCTCAGCTATACGGACGCTAGTCGTGACCAA
AAAAACATACTGTTGACTTCAAGTGTCACTTGCGCAGCTGTCGATACTGT
GGCGATGTGCATTGAACCAATGCTGTTCTTTAACATTACCATAGCCAAAG
TGCAGCCTGTGGATTTCGGCGGAGCTTCTTCTCCTGG
FMO14170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5022-RA | 2086 | CG5022-RA | 213..1148 | 10..937 | 4230 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10345985..10346362 | 420..796 | 1715 | 98.7 | Plus |
| 2L | 23513712 | 2L | 10345747..10345922 | 246..421 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 10345468..10345575 | 97..204 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 10344654..10344743 | 10..99 | 450 | 100 | Plus |
| 2L | 23513712 | 2L | 10345646..10345689 | 204..247 | 205 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:24:55 has no hits.
FMO14170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:31 Download gff for
FMO14170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5022-RA | 207..1148 | 2..937 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:42 Download gff for
FMO14170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5022-RA | 207..1148 | 2..937 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:42 Download gff for
FMO14170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10345987..10346366 | 422..800 | 98 | -> | Plus |
| 2L | 10344648..10344743 | 2..99 | 95 | -> | Plus |
| 2L | 10345471..10345575 | 100..204 | 100 | -> | Plus |
| 2L | 10345647..10345689 | 205..247 | 97 | -> | Plus |
| 2L | 10345749..10345922 | 248..421 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:31 Download gff for
FMO14170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10345471..10345575 | 100..204 | 100 | -> | Plus |
| arm_2L | 10345647..10345689 | 205..247 | 97 | -> | Plus |
| arm_2L | 10345749..10345922 | 248..421 | 100 | -> | Plus |
| arm_2L | 10344648..10344743 | 2..99 | 95 | -> | Plus |
| arm_2L | 10345987..10346366 | 422..800 | 98 | -> | Plus |
