FMO14171.5prime Sequence
981 bp (876 high quality bases) assembled on 2014-07-11
> FMO14171.5prime
TCAGTCGACATGAAGCCGGAGGACCAGAACAACTTTTCTCAGAATTCGCG
ATCCTCTCCAGATTCCAGCACTGAGAACAATTCGAGCAGCAGTGATTCGG
AAATGGAATTTGTGGGCACAAGTGCACGGGGAATGCTGAAACATAAGAAA
AAAGATGAGAGGAAAATATCGGAACTCACCCGAAAGTTGGCGGAGGCTGA
AATAAATCTGAAGGCCCAACAGGAGAAGGGCAGTATACTTGAAAACTGCA
TCAAGGATAAGGATGATTTTATTAAGACCCTGCAATTGTCGATTGACTTA
GTAACGCAAACAAAAGAAATGACCATACAGAAGTTACAAACTCAAATTAT
GGACTTGCAAAGTGATCTCGACTTGAGTAGGATTACAATTAAGAAGAACG
ATGGAGGAAATTGTGCTCCAGCGCATGATAAAGTTGTGAAAGAACGAAAG
GAGTTAAATATGGAAAATGGAAAATTTCGAGAGGGGAATGATCAGATTGT
TGAAATCGAGAAAATTTTGAACTCAAAAGAGGCGGAAATCGCCAGACTAG
AATTCAAAATTGACGAGTCGAAGCTAAAAATTGTGCAATTGGAAGGTGCA
GTAAAGGCGAAGGACGAAAAGATAGTGAAAATGACAGAGATATTGTCTGA
GTATAACGTTAATAATAAAGACCACGATGAATTTCGTATTACTGGGCTCT
TCCAAGTTGCCTTCAATTAAATTGGTGACACTACCTGATTTCGAACCCTT
TGCCTCAGTTTCGAGGATATTCCTTCTGCCGGTCGTGTTGGATGATATCC
AGCGTAGAATCGATGCAGTTTCGATAACGCCACTGAATCAAATAATATAC
GGGCTGTGGGGATTGGGTGGCGAGTTCTGCTTGCTTACAAAATTGCTAAA
ATGACGACACATCGACGAATGAAACTTATATATCCAGCTTCGTCGATTCG
ACACATGTCTATGGCCTAACGGCCAGAATAG
FMO14171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7668-RC | 1736 | CG7668-RC | 182..1134 | 9..953 | 4355 | 98 | Plus |
| CG7668-RA | 1506 | CG7668-RA | 182..1134 | 9..953 | 4355 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20003302..20004165 | 84..939 | 3660 | 97.8 | Plus |
| 3L | 28110227 | 3L | 20002917..20002992 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-29 00:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G4 | 3856 | G4 G4_DM 3856bp | 2855..2911 | 681..626 | 111 | 68.4 | Minus |
FMO14171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:32 Download gff for
FMO14171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7668-RA | 174..1140 | 1..961 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:02:46 Download gff for
FMO14171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7668-RA | 174..1140 | 1..961 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:02:46 Download gff for
FMO14171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20002909..20002992 | 1..84 | 95 | -> | Plus |
| 3L | 20003303..20004185 | 85..961 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:32 Download gff for
FMO14171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19996009..19996092 | 1..84 | 95 | -> | Plus |
| arm_3L | 19996403..19997285 | 85..961 | 97 | | Plus |
