FMO14176.5prime Sequence
1033 bp (951 high quality bases) assembled on 2014-07-11
> FMO14176.5prime
TCAGTCGACATGTCGGATTCAGATAGCAAGCGGATCGATGTGGAGGCCCC
GGAGCGAGTGGAGCAGCACGAATTGCAGGTGATGCCGGTGGGCAGCACCA
TTGAGGTGCCCAGCTTGGACAGCACACCCAAGCTATCGAAACGGAACAGT
TCGGAGAGAAGTCTACCGCTCAGGAGCTACAGCAAATGGTCGCCCACGGA
GCAGGGAGCCACTCTGGTGTGGCGGGATCTCTGCGTCTATACCAATGTCG
GTGGTTCCGGTCAGCGGATGAAGCGGATCATCAACAACTCAACGGGGGCC
ATTCAACCGGGCACTCTGATGGCTCTAATGGGCTCGAGTGGCTCTGGGAA
AACAACACTCATGTCAACGCTCGCCTTTCGACAGCCGGCCGGGACCGTCG
TTCAAGGCGACATTCTGATAAACGGCCGGCGCATTGGGCCCTTCATGCAT
CGCATCAGCGGCTACGTCTACCAGGATGACCTCTTCCTCGGATCGCTGAC
TGTTCTCGAGCACTTGAACTTTATGGCACATCTCCGCCTGGATCGTCGGG
TGTCGAAAGAGGAGCGTCGCCTCATCATTAAAGAGCTGCTGGAGCGAACC
GGCCTTCTTTCGGCGGCGCAAACTCGAATTGGTAGTGGCGATGACAAGAA
GGTCCTTTCGGGGGGAGAACGCAAACGATTGGCATTCGCCGTGAGCTGCT
GAACAATCCGGTGATTCTATTTTGCGATGAGCCTACCACGGGACTGGACT
CATACAGTGCCCAGCAGCTGGTGGCCACGTTGTACGAGTTGGCCCAAAAG
GGCACCACCATACTGTGCACCATCCATCAGCGAGTTCGCAGCTCTTCGAT
ACTTTACAACGTAATGTTGCTGCGATGGGCGAGTAGCCTTTACGGGATCA
CTCAGCATGCGCTTAGTTCTTGCGAATCATGGATACTACTGCCCGGAGGC
TACAATCCGGCGATTTCTTAATTGGTGGTCTGCGACGGATTCTGCTATTG
AGACAGCCTCGCGAGAATCGGTCACACCTTGTG
FMO14176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| st-RA | 2146 | CG4314-RA | 89..1123 | 10..1030 | 4625 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16498725..16499188 | 525..977 | 1815 | 96.8 | Plus |
| 3L | 28110227 | 3L | 16497739..16498067 | 10..338 | 1645 | 100 | Plus |
| 3L | 28110227 | 3L | 16498403..16498541 | 388..526 | 695 | 100 | Plus |
| 3L | 28110227 | 3L | 16498244..16498295 | 337..388 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:25:50 has no hits.
FMO14176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:54 Download gff for
FMO14176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| st-RA | 81..1090 | 2..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:03:46 Download gff for
FMO14176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| st-RA | 81..1090 | 2..998 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:03:46 Download gff for
FMO14176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16497731..16498067 | 2..338 | 98 | -> | Plus |
| 3L | 16498246..16498295 | 339..388 | 100 | -> | Plus |
| 3L | 16498404..16498540 | 389..525 | 100 | -> | Plus |
| 3L | 16498726..16499169 | 526..959 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:54 Download gff for
FMO14176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16490831..16491167 | 2..338 | 98 | -> | Plus |
| arm_3L | 16491346..16491395 | 339..388 | 100 | -> | Plus |
| arm_3L | 16491504..16491640 | 389..525 | 100 | -> | Plus |
| arm_3L | 16491826..16492269 | 526..959 | 97 | -> | Plus |
