FMO14177.5prime Sequence
950 bp (870 high quality bases) assembled on 2014-07-11
> FMO14177.5prime
TCAGTCGACATGATTTCTATCTGCTGTTCTCGTTTTTCATGCATTTTATT
TTTGCTGTTCCTGATCTTTTCCCTCGTGCTGAGCTACATATGGTGGAGCC
CGACGAAAGGAGGAACCAATCCGGAGGTCCTGCCGGTCGTTCTGTGGCAC
GGAATGGGCGACACCTGCTGCGTACCCTTCAGCCTGGGTGCCATTATGAA
CCTGATCGTGGAGCAAACAAAGGGCGGCTATGTGCGATCCCTGCAGATCG
GCGGCAATGTTTTGATAGACTGGCAGAGCGGTTTCTTCATACATCCCAAC
GAACAGGTGGATTACGTTTGCAAGCAACTACTGCAGGATGAGCACCTGGC
CAAGGGATACCACGCCATCGGATTCTCGCAAGGCGGCCAGTTTCTGCGTG
CGGTTGCCGAACGTTGCCCGAATCCGCCAATGAGGAACCTTATCACACTC
GGTGGGCAGCACCAGGGCATCTTCGGACTGCCCATGTGCCCCACCTTAAC
CGAAAAGCCCTGTGATTATATCACGAGGCTACTGGACAACGCCGCCTACG
CACCTGAAGTGCAGAAGGCATTGGTTCAGGCCACCTACTGGCACGACCCG
ATCATGGAGAACAAATACCGCCTGGGCAGCACATTTCTCGCGGACATTAA
CAACGAGCTCTTCATCAACAAGTTCTACATTGAGAATCTGCAAAAGCTTA
AGAAATTTGTGATGGTGCAGTTCCTAAACGACACAATTGTCCAGCCGAAG
AGTCCCAGTGGTTTCATACTACACCACTGGGCAGACAAGTCATCCAGCCC
TTTACTGAGAGCAAGTCTATCAAGATCTGGGACTGACAGATGCATCGACA
GACACTGTCTTCTCGCGTCGAGTGATCACCTGGCCATATCCAAGCTGATT
ATCCAGAACATATGGCTCTCCTTAATCCGAAAAGCCAGCTTTCTAGACAT
FMO14177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppt1-RB | 1286 | CG12108-RB | 189..1118 | 10..920 | 4130 | 97.4 | Plus |
| Ppt1-RA | 1165 | CG12108-RA | 68..997 | 10..920 | 4130 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8689435..8689979 | 554..10 | 2710 | 99.8 | Minus |
| X | 23542271 | X | 8689145..8689294 | 704..555 | 750 | 100 | Minus |
| X | 23542271 | X | 8688975..8689088 | 814..705 | 390 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:25:53 has no hits.
FMO14177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:55 Download gff for
FMO14177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt1-RA | 60..1008 | 2..933 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:03:49 Download gff for
FMO14177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt1-RA | 60..1008 | 2..933 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:03:49 Download gff for
FMO14177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8688962..8689088 | 705..826 | 95 | <- | Minus |
| X | 8689145..8689294 | 555..704 | 100 | <- | Minus |
| X | 8689435..8689984 | 2..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:55 Download gff for
FMO14177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8582995..8583121 | 705..826 | 95 | <- | Minus |
| arm_X | 8583178..8583327 | 555..704 | 100 | <- | Minus |
| arm_X | 8583468..8584017 | 2..554 | 99 | | Minus |
