FMO14183.5prime Sequence
1009 bp (903 high quality bases) assembled on 2014-07-11
> FMO14183.5prime
TCAGTCGACATGAACTTCAATCGCATGGATACCGCCCATCGGTTGCGCGT
CGATGTTCGACTTTATGGGGGATCGATGGGAAATCAGCTAAATGACAAAG
GCACCGCCTCCTCCACGCCCACCATTTCATCGGACGATCTCAGTGATCTC
GCCGATTCACCGGTGGATGAGAAGGCCGAAGCTGATGTGGAGGTGACCAA
CGAGATCTCGGCGCCCTATGAAGTGCCCCAATTTCCCATTGAACAGATCG
AGAAGAAGCTGCAAATCCAGCGCCATCTCAATGAAAAGCAGGCTACAGGA
CCTAGACCAGTGGCCACAGCCGCCGTATTGGCCACAAACAGGGAATCATC
CAGCAGCACCGAGGGCCGCGAGTCCGCCGTTACTATGGAGAGAAACGATG
CGGACATTAACTTTCAACGGGTCTCAATTTCGGGTGAGGACACCAGTGGC
GTACCGCTCGAGGATTTGGAGCGGGCCTCGACCCTGCTGATCGAGGCACT
GCGCCTGCGTAGCCACTACATGGCCATGTCGGATCAATCGTTTCCCTCGA
CCACGGCTCGATTCCTCAAGACAGTGAAGCTCAAGGATCGCATCAACAAT
CTGCCCGTCAAGGAGGTGTCGGAATCTGCAGATGTCCATTTGAGACATTC
GCCAATGAAGATTACGAATCCGTGGAACGTCGAGTTTCCCAATGACGAAG
ATTTCAAGATTAAGCCCCTCAACGGAGTGTTTCACATTTACGAGAATGAT
GACGAAAGCAGTGAGATCAAATACGATATCCAGATATGAGCCAATTCGTA
ACGACATGCAGTCATGTGCATATGATTGCCGATGGGCCATTGAATCCTTC
TGCTATCGACGTCTTCTGTTATCTGTCGTCCAGTATCAGATGCACGTGCT
CCTCCACGAGCTGCGTGGGCCTGGCTGCCCAGAAAGGCGTGGCGCATCTC
GGATTCTACACACCCGCAAGGGGGACACCACACTCCATGCCGCATCTGCA
CTGAGACAA
FMO14183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AMPdeam-RJ | 2620 | CG32626-RJ | 114..1106 | 9..996 | 4555 | 98 | Plus |
| AMPdeam-RG | 2611 | CG32626-RG | 114..1097 | 9..996 | 4410 | 97.1 | Plus |
| AMPdeam-RF | 2814 | CG32626-RF | 450..1300 | 142..996 | 3745 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13834815..13835149 | 622..288 | 1675 | 100 | Minus |
| X | 23542271 | X | 13837612..13837757 | 288..143 | 730 | 100 | Minus |
| X | 23542271 | X | 13837850..13837985 | 144..9 | 680 | 100 | Minus |
| X | 23542271 | X | 13832903..13833032 | 751..622 | 650 | 100 | Minus |
| X | 23542271 | X | 13832518..13832671 | 996..843 | 370 | 88.5 | Minus |
| X | 23542271 | X | 13832745..13832840 | 842..751 | 280 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:25:35 has no hits.
FMO14183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:37:48 Download gff for
FMO14183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32626-RJ | 114..1116 | 9..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:03:34 Download gff for
FMO14183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AMPdeam-RJ | 114..1116 | 9..1007 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:03:34 Download gff for
FMO14183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13832746..13832840 | 751..841 | 95 | <- | Minus |
| X | 13832904..13833031 | 623..750 | 100 | <- | Minus |
| X | 13834815..13835149 | 288..622 | 100 | <- | Minus |
| X | 13837613..13837757 | 143..287 | 100 | <- | Minus |
| X | 13837852..13837985 | 9..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:37:48 Download gff for
FMO14183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13726779..13726873 | 751..841 | 95 | <- | Minus |
| arm_X | 13726937..13727064 | 623..750 | 100 | <- | Minus |
| arm_X | 13728848..13729182 | 288..622 | 100 | <- | Minus |
| arm_X | 13731646..13731790 | 143..287 | 100 | <- | Minus |
| arm_X | 13731885..13732018 | 9..142 | 100 | | Minus |
