FMO14185.5prime Sequence
1010 bp (940 high quality bases) assembled on 2014-07-11
> FMO14185.5prime
TCAGTCGACATGCGCCCCTACATCTGCCTCATGGAGCTGCCAATCAACCG
ACCTGGAAGCGGGAACCTGCTGCTGGGACTCACCTCCGTGGTGGGTCTCA
TTGGAGGCGCCTATCTGCTGCAGTGTGGCGCCCAGCAGCTCTTGGGCAAA
CTAGCCAATAAGAAGTGGAGGAAGGAGGAGTCCAGCAGCGAGGATCACGC
CTGCAACGTCTGCTGTGCGGACCTGGATCTGAGCAGTGCCAAAAACTACG
TGACATGTTGCACCTGCGAAAAATCGGTTTGCCGCGGGCCTAAATGCGCC
GACTGGCGGCCCAAGGACGCCAAGTGGGAGTGCCAGCTGTGCCAGAGCTC
CAAGGAGTCGCTAGCCCACACCTCCTCGTGGGTGGCCGAGCAAATGTCCT
TCAACCAGCATAAGTTTGTCTATCCGATGAGGGCTAGGAGCGAGGTGTAT
ATACCGATTGTGGGCGATGGCAACGACAGCAGCATGCAATTCGAGAGCGT
TAGCCAGATTGGACAAAACGCCCACATGGACGAACGGGCCAAGATCCGCG
AGTACGTCGAGGAGATTGTGGCCGAAATGCTGGGCGGCAATTTGGACCAC
GTCAAAGTGGGGCAGCTGTCCAAGAGTGAGAACTATCTGCCGGCCATCGT
AAATGGCCATACCAACAATAGTAATAATAATAATAACAACAACCATGCGG
ACTCCGAGCTGGCCGACCTCTCGCAGACCCGACTGCGCAGTCTCATCGAG
ACCATCATAGCGGAGACCCTGCGGAGCTCCACCCTCAGCGCCAGCGGAGC
CGTCTCGGAGATCAGCCTGGACACCAGGTCTCACGTCTCCGATCTGGCCA
ATGGAAACGGGCTGAAGCGGCGCCATCGCACCGAGCACTACTTCGAGCCG
AGGATCTACCAGGATCTGTTGGCCACAGCGGTGCTAAATAAGAATTGTGA
TAAGGAAAGGAAATCAAGCCTGGCGGCCGGAAAGATACGCCCCGAACATG
ATTGTCTGCC
FMO14185.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43340-RP | 3585 | CG43340-RP | 332..1311 | 10..991 | 4710 | 98.9 | Plus |
| CG43340-RF | 3544 | CG43340-RF | 195..1174 | 10..991 | 4710 | 98.9 | Plus |
| CG43340-RA | 3681 | CG43340-RA | 332..1311 | 10..991 | 4710 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7638598..7638905 | 635..942 | 1525 | 99.7 | Plus |
| 2R | 25286936 | 2R | 7634759..7635000 | 246..487 | 1195 | 99.6 | Plus |
| 2R | 25286936 | 2R | 7635054..7635200 | 488..634 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 7630192..7630328 | 10..146 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 7634215..7634314 | 146..245 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-29 00:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 29..66 | 659..696 | 118 | 78.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7067..7104 | 659..696 | 118 | 78.9 | Plus |
FMO14185.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:38:08 Download gff for
FMO14185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43340-RA | 332..1290 | 10..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:04:20 Download gff for
FMO14185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43340-RA | 332..1290 | 10..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:04:20 Download gff for
FMO14185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7630192..7630328 | 10..146 | 100 | -> | Plus |
| 2R | 7634216..7634314 | 147..245 | 100 | -> | Plus |
| 2R | 7634759..7635000 | 246..487 | 99 | -> | Plus |
| 2R | 7635054..7635200 | 488..634 | 100 | -> | Plus |
| 2R | 7638598..7638905 | 635..942 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:38:08 Download gff for
FMO14185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3517697..3517833 | 10..146 | 100 | -> | Plus |
| arm_2R | 3521721..3521819 | 147..245 | 100 | -> | Plus |
| arm_2R | 3522264..3522505 | 246..487 | 99 | -> | Plus |
| arm_2R | 3522559..3522705 | 488..634 | 100 | -> | Plus |
| arm_2R | 3526103..3526410 | 635..942 | 99 | == | Plus |
