FMO14186.5prime Sequence
1096 bp (934 high quality bases) assembled on 2014-07-11
> FMO14186.5prime
TCAGTCGACATGTCGGACAAGCAGCAGGAAAAGGAGCCAATCCCCGAGGA
GGAGCAGCAGCAGGAGCAGGAGCGGGAGCATGAGGCTCCTGGCAGCAGAC
ATGCCTGTTGCGGATCTGGACCGGATCCGGAAGCGGAACCGGAAGTGGAG
ATGGATGTCGAGGTGGAGGAGGCATCGGGATCAGCAATTGGCGCTGCAGC
TGCTGGCGAATCGGATGCACCCGCTCCGGCCAATCCAAATCCGGGGCTGG
AACGCGACAGGGACAGGGACTCGCACGGCGACAGATCCACTCATCGTGAT
GAGTTTGGAACGCAGCGTGTTTACAAGAAGACCTCGCCAAATTGTGTGCT
GACTTTATATTTACCCACTCGCGAGATAACACTCACCGGAAATAATCCGT
CCGTTTTGAGGGGCATCGTCTACGTGGATCCGAAGGCCATCCAGGGATAT
CGCGTATACGCCCAGCTGACGCTGACGTTCCGGTATGGCCGCGAGGATGA
GGAGGTGATGGGTCTGCGATTTTGCAACGAGGCCATCATGTCGCTGCACC
AGATTTGGCCACGACTCGAGGAGCCCACGCCAGAGTCGCTCAGTCCACTG
CAGGAGGCCCTGATGAAGCGCCTTGGCGATGGAGCCCATCCCTTCACCCT
CTCGCTATCCTCCTACGCCCCACCCAGTGTCCAGTTGGTGCCGCCAAGCG
CTATTACGGAGCTCCCATTGCCACCAGCTACGATGTTCGCTGCTTCATCG
CGGACAAACGGATGAGAAATTCCATCGTCGGGCTTCGGTGAAGATGGGCG
TACGGGTCATCTATCGCACGGATGTCTTTCATCAGCATTTGGCGCCCGAG
CAGTATGCCGCCTTCGCCGGGCGTCAAACATCGCCCATCGCCGCCCGCCA
GTGCCACGCCCCGTTCGTGCGGCGAGGGCGGCGAACAGCATACAACTCAC
ACCCTACAGCATTCGCAATCCCAGCCCAGTATACGGATCAAGCCAAGTTG
AAAGTCCGAGACGCGTGTACTTCCTCCCCAAGCTTCGCTCTCCTCGCAAA
ATCCTTCGATTCACGGGTTCGTTCGGAACGCTCAAGAAGCAGAAAC
FMO14186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32683-RB | 4879 | CG32683-RB | 62..1118 | 10..1063 | 4760 | 97.5 | Plus |
| CG32683-RA | 5139 | CG32683-RA | 322..1378 | 10..1063 | 4760 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10452157..10452431 | 284..10 | 1375 | 100 | Minus |
| X | 23542271 | X | 10427318..10427521 | 484..281 | 1020 | 100 | Minus |
| X | 23542271 | X | 10421297..10421524 | 981..756 | 950 | 96.5 | Minus |
| X | 23542271 | X | 10424807..10424957 | 750..601 | 690 | 98.7 | Minus |
| X | 23542271 | X | 10427097..10427219 | 604..482 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:26:28 has no hits.
FMO14186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:38:10 Download gff for
FMO14186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32683-RA | 318..1319 | 2..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:04:26 Download gff for
FMO14186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32683-RA | 318..1319 | 2..1002 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:04:26 Download gff for
FMO14186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10421297..10421530 | 751..981 | 96 | <- | Minus |
| X | 10424807..10424954 | 604..750 | 98 | <- | Minus |
| X | 10427098..10427218 | 483..603 | 100 | <- | Minus |
| X | 10427320..10427517 | 285..482 | 100 | <- | Minus |
| X | 10452157..10452435 | 2..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:38:10 Download gff for
FMO14186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10315330..10315563 | 751..981 | 96 | <- | Minus |
| arm_X | 10318840..10318987 | 604..750 | 98 | <- | Minus |
| arm_X | 10321131..10321251 | 483..603 | 100 | <- | Minus |
| arm_X | 10321353..10321550 | 285..482 | 100 | <- | Minus |
| arm_X | 10346190..10346468 | 2..284 | 98 | | Minus |
