FMO14192.5prime Sequence
1006 bp (899 high quality bases) assembled on 2014-07-11
> FMO14192.5prime
TCAGTCGACATGGCCAACTATGGGGACTACGATAATCTGGATGCTCTATT
AGCCGACCTGCAAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGC
AATATGGAACTGTCCAGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTT
GTGGACAACACTCCAGGTTATGGAAGTCTCAGGGGCAAAGCCCAGCCCCA
GGTGTATCAAGAGCACTACAGCGTAGAGACACGCTCCCCAACGGCTGGAC
ATGATTTTAATGGCTCCTCAACGACTCCGGGATACGCTAACCAGGGATCG
TTGCCACGTCAGGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGACTC
CTTGCTGCAGGATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTC
CAGTCTCGAAATACAATACGATGAATAGTTATGCCACCGTGGAGGAGCGT
CCTTCAGTGGACAGCCTGCTGAAAGAACTGGACAATGCTCACATCTATGC
TGTTCCTAACGGATCTGCGCATAAATCTCCGACGCCGGGACGACATGTCA
CCATCACCGTTCGGGAAACGAAGACGGAGAAGTTGACGGGTCCGGATGGA
CCAGTTGGCACTGTCGAGGAGCAAATTGTGCAGCAGAAGGATTCTTATAC
GCCCAATCATGCTGTTCCGGGACAACAGGTGCATCAGGCCTATACGTCGC
AGGCCACCAAGGAACTGGATGATCTGATGGCTTCACTTTCCGACTTCAGG
TTAGCAACGGACAAACGGCATCGGGAACGGCAGTCATCCGCAACAGCACT
CGTCGACAGTGCAGCACCAGACGGTAACCGACTACGCCAGACCAAACAAG
GGTAGCCAGCAGCACATCTCACCCAGACGATCGAGGAGACGACATCGTCC
GAGACATTCGCGGAGATCAGTGGATTCTATGCTAGCCAATCTACAGCCAT
ATTGAGTCGCCAGGGAGTCAATACCTGCGAGGCTGCTTGCCATAGGCTGC
GAGAAG
FMO14192.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RH | 2097 | CG31794-RH | 80..1085 | 9..1006 | 4540 | 97.6 | Plus |
| Pax-RK | 2255 | CG31794-RK | 237..1215 | 36..1006 | 4405 | 97.6 | Plus |
| Pax-RJ | 2253 | CG31794-RJ | 263..1241 | 36..1006 | 4405 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19410248..19410414 | 370..204 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 19410480..19410644 | 204..40 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 19404452..19404685 | 975..747 | 740 | 92.7 | Minus |
| 2L | 23513712 | 2L | 19409406..19409552 | 748..602 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 19409769..19409910 | 512..371 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 19409612..19409704 | 604..512 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-29 00:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..6814 | 35..147 | 123 | 62.4 | Plus |
FMO14192.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:38:17 Download gff for
FMO14192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RH | 73..1070 | 1..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:04:44 Download gff for
FMO14192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RH | 73..1070 | 1..990 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:04:44 Download gff for
FMO14192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19410480..19410643 | 41..204 | 100 | <- | Minus |
| 2L | 19404434..19404682 | 750..990 | 92 | <- | Minus |
| 2L | 19409404..19409549 | 605..749 | 99 | <- | Minus |
| 2L | 19409612..19409703 | 513..604 | 100 | <- | Minus |
| 2L | 19409769..19409910 | 371..512 | 100 | <- | Minus |
| 2L | 19410248..19410413 | 205..370 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:38:17 Download gff for
FMO14192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19410480..19410643 | 41..204 | 100 | <- | Minus |
| arm_2L | 19404434..19404682 | 750..990 | 92 | <- | Minus |
| arm_2L | 19409404..19409549 | 605..749 | 99 | <- | Minus |
| arm_2L | 19409612..19409703 | 513..604 | 100 | <- | Minus |
| arm_2L | 19409769..19409910 | 371..512 | 100 | <- | Minus |
| arm_2L | 19410248..19410413 | 205..370 | 100 | <- | Minus |
