FMO14195.5prime Sequence
971 bp (865 high quality bases) assembled on 2014-07-11
> FMO14195.5prime
TCAGTCGACATGGAAAAGCACTGGAGATTGGTCTTGATCATCAGCATCTG
GATTTTAGTGGTGAATGCAGCCGTGAATGAGTCCACTTTGCGACGGCACC
GCTACGAGTACGGATTTCTCAACGGCAGCCTGGAGTTGTCCCCAGAAATT
ATCTCAACGGATATTCGGGGAAAAGAAGCAGCTGCCATCGAATCACCGCA
TGAACCCCATCTCACCAGGAGCTCCGTCATCTTCGGGCTTACCAAAGTGG
CCAACGAGAGCAATGTGACTCCCAGCTGCTACGCCCACTTGAAGCAAGTG
CAGCGGGGAATCCTCAGCAGGCAACCATGGGCCATGAAGGTTTTAGATGC
GTCGGGAACCAAGCCATCCGGCTTTGTGTTCGGCCAGAACTACTGGCTGG
GCAGTCGGGATGGATGTGAAGGTGTCCGTCGGCCCGTAGGCATCACCTTG
TCGCGGAACTACGAGCGAGTAATGCACTACAGCATCCTCACGCAAAGTGC
TCCCTTTGGGATGGACTACCGCGTGATATACATGCGCCACCGCTCACCGT
GGCAGGTGGAGATTAAGGTGATGTCCGAACAGGTGCTCCACATTGGATTG
TGCCTGCCCAGCTCCTGCAGCTCCGAGGAGGTGAAGCAGCTGGCCAGGTA
TTATGTGGCCGGAGATTTGTTCGCCGCGGATGATATGTTCGATATGAAGC
CGGAGGTGCTCTACATGAAGGACCTCCGGCTGAGCGAACGCTTCTACCAG
AGGCTGACCTTCCGTTTGGTGTGGCGCCATCCTGGTAACCGGTGCCTAAT
GCTCTGCGCCAGCAAGTGCGGGTGGCAGAGGCCGATGAGCCGGATCTGGG
TCTGGCTCCGTGGAATCAAGTGTGGCAGCACTGGATACCCTCTTGAAGTG
GCAGCTTTCAAGTTCTGTCCTGTTTCGATGTGCATAACTGGCGGAAGATT
CCGCATGAAGGGAAACACCAC
FMO14195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30471-RB | 2435 | CG30471-RB | 91..1060 | 5..954 | 4365 | 97.8 | Plus |
| CG11353-RB | 3115 | CG11353-RB | 807..1341 | 199..733 | 560 | 74.3 | Plus |
| CG11353-RA | 2910 | CG11353-RA | 602..1136 | 199..733 | 560 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15535590..15536166 | 340..905 | 2385 | 97.1 | Plus |
| 2R | 25286936 | 2R | 15535190..15535525 | 5..340 | 1665 | 99.7 | Plus |
| 3L | 28110227 | 3L | 4536895..4537282 | 346..733 | 365 | 72.9 | Plus |
| 3L | 28110227 | 3L | 4536222..4536363 | 199..340 | 200 | 76.1 | Plus |
Blast to na_te.dros performed 2014-11-29 00:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 3259..3305 | 386..433 | 111 | 72.9 | Plus |
FMO14195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:38:04 Download gff for
FMO14195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30471-RB | 88..1075 | 1..970 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:04:10 Download gff for
FMO14195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30471-RB | 88..1075 | 1..970 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:04:10 Download gff for
FMO14195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15535187..15535525 | 1..340 | 99 | -> | Plus |
| 2R | 15535591..15536239 | 341..970 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:38:04 Download gff for
FMO14195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11422692..11423030 | 1..340 | 99 | -> | Plus |
| arm_2R | 11423096..11423744 | 341..970 | 96 | | Plus |
