FMO14196.5prime Sequence
961 bp (872 high quality bases) assembled on 2014-07-11
> FMO14196.5prime
TCAGTCGACATGGAACCAGATCCCAATGGGATAAAAATAGAGCCCTCACT
TGATCAGCAGCAGTACGCCACCCATGTGCTGGCCATCAATGGCTCCAATG
CCCGCCTGCTCATCGAGCATCCCTCAGCTTTGTTGGTACCACTCTCCTCG
CATCACCAGCTGCAATTGCAACAGCAGCAACAACAGCAGCAGCACGTACA
GCAGCAACATCAACAACAGCAGCAGCAGCATCAGCAACAACAGCAACAGT
TCCAGCAGCAACATCTTCACCAGCAGCAACAGGATCAACTGCAGTTCCAG
CAACAGCATCTCCAGCTTTATGCACCACTGAAGCAACAGCAATTGCAGCA
GCAGCAATCGCAGCAGCCACCCACTCCATTGGGACCCACCAGCAGTGCCA
GTTCCGCATCCATAACAGGTGCCTCCACCACTGGCCACCAGCAGAGGTGG
AACGAGAGCCCCGAGGCACGCCAGCGCCGTCTGGCCAGAAATGCTGAAAG
GATGCGGGAACGCCGGCAGCGCGAGAGCGAGGAGGAGTATCGCAAGCGAC
TACTCCGGAATGCAGAAGCCAATCGCCAGAGACGCCAGAATGAATCCGAC
ATAGAGCGGGCCATGCGGCTAGTGAGGAATGCGGCCAGGCAACGGCTACG
CCGGGCCATGGAGTCGCCGGACCAGAGGGCCAAACGGCTGGGCCAAATTG
GCCGAAAGGATGCGCATGTATCGCGCCAGCGAGACGAACGATCAGCGAAA
GCTCCGGCTGGCAGAATGGCGGCAGGGCGCGCCAAGGATCGCCAATGAGT
CACCGGAGGAGCGGAGGAAAGACTGAGAAAGCTGACGATTATGCCAAAAA
GGTCAGAGAAAAGAAAACGTACTGAGCATGTTGTGGTGCACGGGGTTCGT
CGTCGTGTCGTCTCAACGCCGACATTCCTCCCTCGTCGGTCACGGACAGC
AGTCTCCACCT
FMO14196.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14442-RD | 2983 | CG14442-RD | 1052..2002 | 10..952 | 4360 | 98.2 | Plus |
CG14442-RC | 4562 | CG14442-RC | 1052..2002 | 10..952 | 4360 | 98.2 | Plus |
CG14442-RA | 4658 | CG14442-RA | 1046..1996 | 10..952 | 4360 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6693032..6693956 | 925..10 | 4085 | 98.6 | Minus |
3L | 28110227 | 3L | 14027696..14027803 | 281..174 | 210 | 79.6 | Minus |
Blast to na_te.dros performed 2014-11-29 00:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..7194 | 150..601 | 454 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 203..370 | 363 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2679 | 152..391 | 344 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6898 | 227..418 | 336 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2534 | 173..444 | 286 | 60.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6938 | 244..475 | 273 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2525 | 253..464 | 268 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2835 | 154..370 | 247 | 62.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1181 | 218..344 | 238 | 67.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1147 | 265..357 | 195 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2449 | 276..417 | 192 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1589 | 232..303 | 189 | 73.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6877 | 292..444 | 178 | 61.6 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3342 | 173..340 | 144 | 60.4 | Plus |
FMO14196.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:38:06 Download gff for
FMO14196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14442-RA | 1041..2003 | 2..960 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:04:14 Download gff for
FMO14196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14442-RA | 1041..2003 | 2..960 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:04:14 Download gff for
FMO14196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6692999..6693961 | 2..960 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:38:06 Download gff for
FMO14196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6587032..6587994 | 2..960 | 97 | | Minus |