FMO14225.5prime Sequence
649 bp (445 high quality bases) assembled on 2014-07-25
> FMO14225.5prime
TCAGTCGACATGAATAGCCTGGCGCGGGTTTTCAGCAACTTCCGCGACTT
CTACAACGACATCAATGCCGCCACCCTCACGGGAGCCATCGATGTGATCG
TGGTGGAGCAGCGCGATGGCGAGTTCCAGTGCTCGCCCTTCCACGTCCGG
TTCGGCAAACTGGGAGTGCTCAGGAGTCGGGAGAAGGTGGTGGACATTGA
GATCAATGGCGTACCGGTCGACATACAGATGAAGCTGGGCGATTCTGGCG
AGGCCTTCTTTGTGGAGGAGTGCCTGGAGGATGAGGACGAGGAGCTGCCA
GCCAACCTGGCCACCTCGCCCATACCCAACAGCTTCTTGGCGTCTCGGGA
CAAGGCCAACGACACCATGGAGGACATCAGTGGAGTGGGTGACAGATAAG
CACACCGACAACACACTCGAGCGTCGCAACCTAAGCGAAAAGCTCAAGGA
GTCACCACGCAAAAGATCCGGGCAGGAGTGGGCCGAGCCCAAGAGCTGTT
TTCAGGGCGAGAAGAAGCCGGCGGACTCGGACTCCGTTGACCAACCAAAG
CAAACCTTCAAACGAAGCTGAAGCCGAAAAAGGCATTTCCGGCGGTCATT
GGAGAAACCGGAAAAAGAAAAGGGATCAATTCAAACCAAAAGTTAACCT
FMO14225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpin-RH | 3858 | CG8709-RH | 480..1114 | 10..649 | 2730 | 96 | Plus |
| Lpin-RE | 3867 | CG8709-RE | 483..871 | 10..399 | 1925 | 99.7 | Plus |
| Lpin-RL | 3959 | CG8709-RL | 480..868 | 10..399 | 1925 | 99.7 | Plus |
| Lpin-RE | 3867 | CG8709-RE | 1010..1255 | 400..649 | 805 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8142098..8142308 | 400..189 | 1010 | 99.5 | Minus |
| 2R | 25286936 | 2R | 8142641..8142822 | 191..10 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 8141575..8141820 | 649..400 | 605 | 90.1 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:28:24 has no hits.
FMO14225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:10:58 Download gff for
FMO14225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpin-RH | 480..1114 | 10..649 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:06:37 Download gff for
FMO14225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpin-RH | 480..1114 | 10..649 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:06:37 Download gff for
FMO14225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8142099..8142307 | 190..399 | 99 | <- | Minus |
| 2R | 8142643..8142822 | 10..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:10:58 Download gff for
FMO14225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4029604..4029812 | 190..399 | 99 | <- | Minus |
| arm_2R | 4030148..4030327 | 10..189 | 100 | | Minus |
