FMO14226.5prime Sequence
850 bp (510 high quality bases) assembled on 2014-07-25
> FMO14226.5prime
TCAGTCGACATGCATTTACACTTTGAGCGAAACATCAACACAAAATGCGA
CTGCACGATACTGTCATTATCATGGATGGGAAAGGTGCCAGATGATATAC
CCGAGGACGAGGGATGGAAGTTGAACCGCACCAACTACTACCAGGAGGGA
TGGCTGGCCACGGGCAATGTGCGCGGCATTGTGGGCGTAACCTTTACCAC
CTCACATTGCCGCAAGAACATGGACTATCCGTTGAGGACCAACTACAACC
TGCGCGGGCATAGATCGGATGTTATCCTGGTCAAGTGGAATGAGCCGTAT
CAAAAGCTAGCCTCCTGCGATAGTTCGGGCATCATCTTTGTGTGGATCAA
GTACGAGGGTCGCTGGTCCATCGAGCTGATCAACGATCGGGAACACACCC
GGTGAACCCACTTTCTCCCTGGGTCACACGATGGGCCGCATGGGCGCTGA
TCTGCTACCCAGGGATGGGCTTTCGTTTCTGGGTAGGGATCGGTGGGCTG
GGGCAAGCGATAATTGGTTCATTCAATGCTCTCATTCTAGGAGTCCAACC
ATTTACCTGGCGGGCATTTTGGGACGCCCGACGACCAGCAAGGTGTACTT
TCGGCACCAACCCCAGGGTCAGGTTATTTGTTGAATGGGATGTTCACCGG
GAGCCGATGGTGTCGCAAGGTTCAGCTGTCCAAACGATGTGCCCAATCAC
CTCCGATGGCCTGGTCCTGCGAGAAGTTCAAGATGGAGAGGCGAGGAGCC
GGAGCCGGTGTACCAATGCGGCAGCGTCTTGTCTGGCAGTAGCTTCAGAT
GATATATCTATTGCTAAGTCGTTGACGACGTCTCACCGCAATATCACACA
FMO14226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tusp-RG | 5626 | CG5586-RG | 428..1238 | 10..846 | 2670 | 92.1 | Plus |
| Tusp-RF | 5635 | CG5586-RF | 428..1238 | 10..846 | 2670 | 92.1 | Plus |
| Tusp-RE | 5998 | CG5586-RE | 794..1604 | 10..846 | 2670 | 92.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27629346..27629514 | 104..272 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 27629570..27629689 | 271..390 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 27615395..27615491 | 10..106 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 27629913..27630012 | 655..756 | 225 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:28:27 has no hits.
FMO14226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:00 Download gff for
FMO14226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tusp-RE | 403..868 | 2..482 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:06:42 Download gff for
FMO14226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tusp-RE | 788..1253 | 2..482 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:06:42 Download gff for
FMO14226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27615389..27615490 | 2..105 | 96 | -> | Plus |
| 3R | 27629348..27629512 | 106..270 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:00 Download gff for
FMO14226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23441111..23441212 | 2..105 | 96 | -> | Plus |
| arm_3R | 23455070..23455234 | 106..270 | 100 | -> | Plus |
