FMO14231.5prime Sequence
964 bp (870 high quality bases) assembled on 2014-07-25
> FMO14231.5prime
TCAGTCGACATGTTAAAACCTGATAAAATGGGCACGTTAACCGATTTCGG
ACAGATAGCTTTGAAATGGGATCCCAAAAATTTGGAAATTCGCACAATGT
CAGTTGAAAAAACACTTGAACCCCTTGTATTACAAGTAACTACTCTTGTA
AATACCAAGGGCCCAAGCAAAAAGAAAAAAGGAAAATCAAAGCGGGCCAG
CGCATTAGTTGCAGCTGTTGAAAAAGCTACAGAAAATTTTATTCAAAAAG
GTGAACAGATCGCTTACGAGAACCCAGACATTACACAAGAAATGTTAACA
GCTGTGGATGAAGTAAAAAAAACTGGAGATGCTATGAGCATTGCAGCCAG
AGAATTTTCTGAAGATCCGTGCAGTTCCCTGAAGAGAGGAAATATGGTGC
GCGCAGCTAGGAATCTGTTGTCAGCTGTAACCCGCTTGCTGATTTTAGCT
GATATGGTTGATGTACATTTGCTCTTAAAATCACTCCACATTGTCGAAGA
TGATCTAAACAAACTCAAAAACGCTTCGAGTCAGGACGAGCTTATGGATA
ATATGAGGCAATTCGGACGCAATGCAGGAGAACTTATAAAACAGGCAGCC
AAACGTCAGCAAGAACTTAAGGATCCCCAATTAACGGACGATTTAGCAGC
TGCTCGGGCGATGCTTAAAAAACATTCAACTATGCTGTTAACTGCATCAA
AAGTATACGTTCGTCATCCGGGAACTAGATCTAGCAAAAGTAAATCGCGA
TTTCATTCTAAAACAGTTTGCGATGCTGTAAATACTATTAGCGATGTGCC
CAAGAAAGTCATCCCAACCGACAGATATATACAGTGAGCGGAGAGCTGCT
GCAGCATAGACGACTTTGACGAGATGTATGATCCATGACTACAGCGAAAG
CGTCACCGTCATGCTCCGAGAGCGTCCTGGAAGATTTATTATGCACCTGC
ATGTATGCGAAATG
FMO14231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Cat-RB | 3487 | CG17947-RB | 55..1015 | 10..952 | 4160 | 96.9 | Plus |
| alpha-Cat-RA | 3000 | CG17947-RA | 55..1015 | 10..952 | 4160 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23334364..23334742 | 558..180 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 23330736..23331016 | 836..558 | 1195 | 98.2 | Minus |
| 3L | 28110227 | 3L | 23337870..23338046 | 186..10 | 870 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:28:47 has no hits.
FMO14231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:08 Download gff for
FMO14231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Cat-RA | 55..929 | 10..879 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:07:06 Download gff for
FMO14231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Cat-RA | 55..929 | 10..879 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:07:06 Download gff for
FMO14231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23330691..23331015 | 559..879 | 96 | <- | Minus |
| 3L | 23334364..23334740 | 182..558 | 100 | <- | Minus |
| 3L | 23337875..23338046 | 10..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:08 Download gff for
FMO14231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23323791..23324115 | 559..879 | 96 | <- | Minus |
| arm_3L | 23327464..23327840 | 182..558 | 100 | <- | Minus |
| arm_3L | 23330975..23331146 | 10..181 | 100 | | Minus |
