FMO14232.5prime Sequence
887 bp (783 high quality bases) assembled on 2014-07-25
> FMO14232.5prime
TCAGTCGACATGATCAAACTGCGGCCATATGTGCCCTCCAAGAGGATTGC
CATACGGGACTCGTCCATCGACGAGGATGCGAGCGACGATGTGGAGGACG
AGGTGTTCATCAAGGATGCCAGGTCGGCGAAGCGCAGCGAGGAGCAGGGA
TTGAAGCGGCCCCTGATGGCGCCGCGTCGCAAACACAGTCCAGGTTCCGG
ACCCGGATCCGGCTCGGGATCAACTCCGATAATGAAGCAGCACAGGAGGC
GGCGCTGCTGCCGCTGCTGCGAACCCTTCTGCTACGCCCTGGCCGCTCTA
ACGGTACTGTGCGCCCTGCTCAGCCTGGCGGCCCTCATGCTGACGCTCTT
CCCGCTGCCGCTGCAGCGAATCCGGCACTGGTGGCGCCCCGATCCCGCCC
AGCTGGCGGCCATCTCAGCAGGCTCCTCCCGCATCTCATATGGCAGCTCG
CTGGGCAGTGAGTTTGTTCCCTGCACCCAGATCAGTGTCCAGAAGCGCTG
GTCTCGCAGCTTGGCGCGCATGAACAGCGAGAGTCCGCTGCGAGCGGCTG
ATCTGAATGGCGATGGCATCAAAGGACGTGGTCTTTGGCTATGGAGTGGA
CGACAACATACCCTACGAGGGCATACCCTTGCCGCGCTGCCAGTGCGCCC
AGCAAGGGGAGGAGTGCCCTGCGAGGGCGGCGTGTGGCCTTGAACGGACT
GACGGATCCATTCTCTGGCAATCGTGAGCGTGCGATGTCTCTCGCTGCAC
TGCAGCGCGATGTGACGGAGATGGGGGCACGATGCGTGCAGCTGTAGATG
GGATGATTACGCATCATGAACGCACTGCTCGTATCTGAAGCCTCGGACTG
AGTGGAAACAACTCGCAATGTATGGATCTGTAACGAT
FMO14232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6184-RF | 3548 | CG6184-RF | 331..1238 | 10..887 | 3715 | 96 | Plus |
| CG6184-RA | 3356 | CG6184-RA | 139..1046 | 10..887 | 3715 | 96 | Plus |
| CG6184-RE | 3380 | CG6184-RE | 284..1070 | 131..887 | 3110 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19655017..19655674 | 780..131 | 2800 | 98.2 | Minus |
| 3R | 32079331 | 3R | 19656205..19656327 | 132..10 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:28:51 has no hits.
FMO14232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:09 Download gff for
FMO14232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6184-RA | 162..968 | 10..803 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:07:12 Download gff for
FMO14232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6184-RA | 139..945 | 10..803 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:07:12 Download gff for
FMO14232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19655017..19655672 | 133..780 | 98 | <- | Minus |
| 3R | 19656205..19656327 | 10..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:09 Download gff for
FMO14232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15481927..15482049 | 10..132 | 100 | | Minus |
| arm_3R | 15480739..15481394 | 133..780 | 98 | <- | Minus |
