FMO14235.5prime Sequence
1062 bp (947 high quality bases) assembled on 2014-07-25
> FMO14235.5prime
TCAGTCGACATGGCCAAACCAAAGGCGAAGGCGGGCGAGACGGAAAAACC
CAAAACCAAGGCAGCGGGAGGAAAAAAGCGTCTGGCGGCCACCAAAAAGA
CGAAAAAGGATGGTGAGAAGGAAAACGAGGATCAGAGCGTGGCCACCACC
TCAGACACATCCGCGGAACTCATGTACGCGATAATGCGACAAGCCGAGCT
CAAGGAATCCCTGCACAAGCGCTACTCAAAGGAGATGCAGCAACTGTACG
CAAAGATGGGACACGAGTCCTTTCGCAAGGCCTTCATCAACGTGTTGAAA
GCCGTCCTAGGGGCTGAGGAGGGCAATGAGAACGCAAACATGGCCCTCAA
CTTCTGCGCCACTTTCGTCACCAGCTCAGATTCGGATGGTACTGAGCCCA
TGCTGGCCGAAACCTTTCATTGGCTGCTTACGACCTATTCGAGCAACCCG
CACATACGTTATCGCATCTGTTACTTTGTGAATCTTATACTTAAGGAGCT
CGGACCCAATGCCGCCTTGGATGACCACCAGTGCGATGATATACTGGAAG
CAATGCTGGACCGGGTGAAGGATGTGTCCGCCAGTGTTCGCAAACAGGCC
GTGTTGGCCATGCAGCGCCTTCAAAATCCAGACAATCCCAGCGACGTCGT
CGTGGGCGCGTACATGTACCATCTCACATCCGATCCCTCGCCCAACGTGC
GTCAGTGCATCATCACGTGCATGGGCCGAAATTATATTACCATTCCGCAC
ATCCTGAGCGTCTTTGGGATGTCGACGAGAAGTGCGCCGACACACTTACG
TCACATGTGCAACTATCCGGTGCGCTCTTACAGTGCCCAGCGGCTTACCC
TGCTGGAGCAGGACTTACGATACATCGGCACCGTGCGCAAACAGTGATCA
CTTCATGCTAAGACGTGGATTGAATCCTATCAGCAAACTACGTCGCTTTG
AATAGCGCTTCTCAAGCTGGGACTCGAATGAAGAAAGAAAACTGCTGCGC
CTTTCCGACGCCGTGTCAGCAATAGCCTTAGAGGATCTTCCAGCAACGAA
CATTCAGCACAC
FMO14235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-G-RG | 4231 | CG34438-RG | 173..1216 | 10..1046 | 4580 | 97.1 | Plus |
| Cap-G-RF | 4387 | CG17054-RB | 173..1216 | 10..1046 | 4580 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13133882..13134446 | 432..985 | 2095 | 96.6 | Plus |
| 2R | 25286936 | 2R | 13133314..13133559 | 10..255 | 1230 | 100 | Plus |
| 2R | 25286936 | 2R | 13133628..13133806 | 254..432 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:28:16 has no hits.
FMO14235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:10:55 Download gff for
FMO14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-G-RF | 165..1232 | 1..1062 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:06:27 Download gff for
FMO14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-G-RF | 165..1232 | 1..1062 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:06:27 Download gff for
FMO14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13133306..13133559 | 1..255 | 98 | -> | Plus |
| 2R | 13133630..13133806 | 256..432 | 100 | -> | Plus |
| 2R | 13133883..13134519 | 433..1062 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:10:55 Download gff for
FMO14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9020811..9021064 | 1..255 | 98 | -> | Plus |
| arm_2R | 9021135..9021311 | 256..432 | 100 | -> | Plus |
| arm_2R | 9021388..9022024 | 433..1062 | 94 | | Plus |
