FMO14236.5prime Sequence
1011 bp (890 high quality bases) assembled on 2014-07-25
> FMO14236.5prime
TCAGTCGACATGCTTGGCGGCGGCAGCGGGGAGCGTCTGTGCACGCCAAG
CACTTCGGCCGGCCCATTCCGCATCTTTTCCGTGGCCGGATTCCAGAACC
GGGCCAATGACATCGTCTACTGCCCGCCGATCGTGCGCCAGCACTCGGTG
CACGTGCCGGAGGACTCCACGGCCATAATCTATTTTGGTGGGGACGTGCA
GGACTTCCCGGAGAGCATGGAGACGAACCGTGACAGTCGGGGCTACATGA
AGTACAACCTCGAAAACTCGGCCATCCTTCTGCGCGAGGCCTTTCCCCGG
TCACACATCATCGTCATCCGGCCCGTGCGCATGGAGTTCAAGACATTCAG
TTGCTTTGACAATTTTGTTCGGGGCAACAACGCTGGAGTTCCGGATCACA
CGCCCATGAACCATGCCCTCCAGCATCTAGAAAAACTGCTTCAGAATCTA
TCGCAGCGCCTGATCTCCATACCAGAGAACGAAATTCTGGATCAGGCCGC
CCAGGCAGCGGCTGCTGCGGCGGCAGTGGCTGCTGCTGCTGCGGCCGCAG
CTTTAACGCTATCCAACGCCACGGTCACCTCGGAGTCCAACTCACAATCG
GCACCGGCCAACGACAGCAGCCAGGAGATGGACATTGATATATTGCAGTG
CAGGAGAATATCACAGTGGACGCGGATGGGGCAGTAATATTTCCGATAGT
TGGCAACGAAGTGCCAGAGGCAGTGAACAATGTATCCGGGAATAATGGCA
CATCGGTGGTGCGGTACGATGATAGTGTAACAACACCAGAGCAGTGACAC
AGCAGCTCAGCAGCAGCAGCAACGGCGCAGCATCAGATGACTTCTCCCAC
ACGGCGATAATGCACAACAATGTGGAGCACTACACAACGATTGTGGTACG
AGCAGCTTTCGCTGCCTCTGCACAACAGCCTCGCACGGGGACTTCCCAAT
CAACGGCAGCAGCGAATAGCAATCCGCTTGTGTGTCGAACCTCAACTTGG
ACAAAATCTCA
FMO14236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31122-RC | 3439 | CG31122-RC | 43..1038 | 9..978 | 4220 | 96.7 | Plus |
| CG31122-RB | 2993 | CG31122-RB | 167..1162 | 9..978 | 4220 | 96.7 | Plus |
| CG31122-RA | 2930 | CG31122-RA | 167..1162 | 9..978 | 4220 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18409498..18409818 | 329..9 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 18408921..18409270 | 780..435 | 1550 | 98.9 | Minus |
| 3R | 32079331 | 3R | 18409332..18409437 | 434..329 | 530 | 100 | Minus |
Blast to na_te.dros performed 2014-11-29 00:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2830..2876 | 552..506 | 127 | 74.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2385 | 547..508 | 119 | 77.5 | Minus |
FMO14236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:10:56 Download gff for
FMO14236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31122-RA | 160..1167 | 1..985 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:06:32 Download gff for
FMO14236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31122-RA | 160..1167 | 1..985 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:06:32 Download gff for
FMO14236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18408696..18409270 | 435..985 | 93 | <- | Minus |
| 3R | 18409332..18409436 | 330..434 | 100 | <- | Minus |
| 3R | 18409498..18409825 | 1..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:10:56 Download gff for
FMO14236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14235054..14235158 | 330..434 | 100 | <- | Minus |
| arm_3R | 14234418..14234992 | 435..985 | 93 | <- | Minus |
| arm_3R | 14235220..14235547 | 1..329 | 98 | | Minus |
