FMO14237.5prime Sequence
551 bp (372 high quality bases) assembled on 2014-07-25
> FMO14237.5prime
TCAGTCGACATGTTTCCCAGACCACCCACTTGTGTTTATGATAGTTTATG
CCCAGAAAGACTGTCGTGCAGAATGGTCGTCGGCTCTAACCACACGCGGC
GCGGTGAAACTGGCAGCAGATTTACAAACAGCAGCAGCTCCAGCAGCACA
AGCGGTGGCCCCACCGCTTCGGCCAGTAGCACCACCAGCGTAACGTCTTC
ACTAGCCACCAATTCCACGTCGACATCGACGGCTGCGGCTCTGTTGTCGT
CCATGTCCCACAAGAGCCATGGCCCTCCGCCATCCGCACCTCCATCTGCA
CACCACCAGACGAACCAGCAGCACCACCAGGGTGGCCCACAGCCAGCCAC
ATGCCACCATTTACCAACAGACAACCAGCACCCTAGCCCCCATCACCAGT
CCCATCAGTCTTCAACGGCAGTGGGCGAAGATCTGCTGGATCGGGATCTG
GGATCTGGATCGTGGTAGTGGACTCATTGTTTGCAACGCAAGGCCGTCAG
CCGCCAACGCATCCCTGGGAAGGTGCCCCGGAACTGGCCCAAGAACAAGA
A
FMO14237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt4-20-RB | 5149 | CG13363-RB | 24..523 | 10..505 | 2160 | 96.4 | Plus |
| Hmt4-20-RA | 6137 | CG13363-RA | 652..1103 | 57..505 | 1945 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 653648..654098 | 505..58 | 1770 | 95.8 | Minus |
| X | 23542271 | X | 654865..654915 | 59..10 | 205 | 98 | Minus |
Blast to na_te.dros performed 2014-11-29 00:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1066..1142 | 113..189 | 133 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2460 | 113..239 | 131 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6833 | 113..206 | 130 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..7055 | 114..375 | 120 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6949 | 127..352 | 119 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6864 | 113..217 | 119 | 62 | Plus |
FMO14237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:19 Download gff for
FMO14237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt4-20-RB | 17..557 | 1..535 | 94 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:07:39 Download gff for
FMO14237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt4-20-RB | 17..557 | 1..535 | 94 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:07:39 Download gff for
FMO14237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 653614..654096 | 60..535 | 94 | <- | Minus |
| X | 654865..654920 | 1..59 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:19 Download gff for
FMO14237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 547647..548129 | 60..535 | 94 | <- | Minus |
| arm_X | 548898..548953 | 1..59 | 91 | | Minus |
