FMO14238.5prime Sequence
1024 bp (913 high quality bases) assembled on 2014-07-25
> FMO14238.5prime
TCAGTCGACATGCTATTGTCCAGGCTAACGTGGCAGGCCAGGATTCTAAC
TCGTCTTCTGTGTAATAAGATGGCCAGCAAGGGATTGCACAATGAGGACA
ACAAGTTGGACACTTTCCGTCGCATCTGTGATGAAATTGCCGGCGAGTCA
AGTTACCTGAAGAAAGCGGAGAGACTGCAGCGATTCTTCGAAAAGGGGAG
CAGTGGCAAGGGCTTCAAGGGCGACACCGTGCTCTGGGTGCAGTTCCTCA
TTCCGGCGGCCAATCAGCGCGTCTACAATCTGCAGAACAAGGCGCTGATC
AAACTCTTTTCGCGCATTTTTAATGCAGATCAACAGCAAATGCATCTGGA
TCTAGAGCAGGATGGCGACGTTTCGGAAACTCTACGCAAGCACTTTGCTG
CTTCTAAGAAACTCAAGCCGCAAAAGCAGAGCAAACTCTATCTGCAGGAG
GTGGAGGAAATGCTCCTGCACCTGGTGGAGCGTACCAAAGAGGATGAGCA
AACAGATCTGCTACAGAAGTTGTGCTCGAAGGCCACTGACCTGGATCTGC
GCACCTTTATTCGCTTGGTGAAGCACGACTTAAGAATCAATGCCCGAGCC
CGGCACATCCTGATGCTTTTGGTCCTGATGCCTACCCCGCATATCAGTCT
TCCCGCGATTTGGTGGCAATTGTCGAACAGTTTGCCACCAAAGAAAATAA
AAATTATGCTAGTAGTCCCGTTAAGAAGACTAAGAAAACGAGCTCGAGTG
CAATTCAGTAATGACACCCATATCGCCCATGTTGGCCAGTCCCTGCAGTC
GGTGGAGGACGCCTTCAGAGAGCCCACTGACTATATAGCGAGATCAATAC
GATGGAGAGCGAGTTCAATCCACAGCAGGCACGACTTCAGTTCTTTAGTC
GCATCTAAAGCCTGTGTGATCACAAGATACGGGCTCTGAAAAATATATTC
CGCAAGCTTTCCTGGCGGTGGGCGATGGATAACTGGAACTCCTGGAAATC
ATTTCTGGGTCGGACACTGGAACC
FMO14238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig3-RA | 2604 | CG17227-RA | 95..1074 | 10..971 | 4450 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12400692..12401320 | 971..361 | 2310 | 96.3 | Minus |
| 3R | 32079331 | 3R | 12401394..12401745 | 361..10 | 1760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:29:11 has no hits.
FMO14238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:20 Download gff for
FMO14238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig3-RA | 92..1084 | 6..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:07:44 Download gff for
FMO14238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig3-RA | 92..1084 | 6..981 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:07:44 Download gff for
FMO14238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12401394..12401748 | 6..361 | 99 | | Minus |
| 3R | 12400682..12401319 | 362..981 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:20 Download gff for
FMO14238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8226404..8227041 | 362..981 | 96 | <- | Minus |
| arm_3R | 8227116..8227470 | 6..361 | 99 | | Minus |
