FMO14241.5prime Sequence
927 bp (825 high quality bases) assembled on 2014-07-25
> FMO14241.5prime
TCAGTCGACATGCAGTGGAAGAAGAAGTTTACTCGATTGAAAGCAGCTAC
TGGAAATTCGCGTGTGCGAAGAATGCTTTGTTGTGGACGCAGAAAGGAAA
ATGGAAGATCAGTTCCTGATGTCACCGCAAGCCCGGGACGGGCCCCGCCC
GGACCACTGCCCGCCAACCAGATGCCTGCGATGGGCAACCAGCAACACCA
TGGAAACCAGCAACATCATGGAAACCAGCAGCAACATCATGGCAATCAGC
ACAGCAACCATCGAGGTCAGAGCGGAAGTTTGTCAAACGCCGCCGGGGTC
AAGGACCCGGTGATGCTACAGGGCGATTTTCGGAAAGTCAGCGGAATCAG
CTCAGAGATCTTTCGGCAGATAGAAGCCGTCGAGAATGACCACGACCCAA
ACACGGCGGCGGCTTTGGAGGCGGTGGAGAGACGCGGTGAGATGATCGTG
CGCGTCCTGGAGCCGCGTTGCATGGGCAGCAAACAGGCGGTGGACGCTGC
CCACAAGCTGATGAACAAGGCGGACGCACGGCACACCGTGCAGCTGGTAG
AAATAGTCAAGCGGCCGGGCCAGACGCTGGGCTTGTACATCCGCGAGGGA
AATGGGGCCGATCGAACTGATGGCGTCTTTATTTCGCGGATTGCACTGGA
GTCGGCTGTCTACACAGCGGCTGCTTGCGGGTGGGCGACGAAATCCTTGC
GGTAATCTGGTGACGTGACACACATGTCCTTAGACGATGTCGTCATATAT
GTCATTCGCGCGCTTGTGCTGGCTATACGTCAGCGCGGGCATAGAGCACA
GATCTCTTGAACGCACGCTCTCTAGCAGACCAGAGCCCCACGTGGTGTCA
TCAGCGAGATTGCAACAGGATCTGACGGACGAACGGATGCAAGGCCGCGC
TCATCCGTGACGACGTACGGAATGTCG
FMO14241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP100F-RD | 11833 | CG1976-RD | 1432..2375 | 10..918 | 3785 | 95.7 | Plus |
| RhoGAP100F-RB | 4652 | CG1976-RB | 680..1623 | 10..918 | 3785 | 95.7 | Plus |
| RhoGAP100F-RJ | 10511 | CG1976-RJ | 1432..2375 | 10..918 | 3785 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31833395..31833983 | 95..682 | 2895 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31818032..31818119 | 10..97 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 31834037..31834105 | 680..746 | 245 | 97.1 | Plus |
Blast to na_te.dros performed 2014-11-29 00:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1520..1591 | 185..259 | 159 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1162 | 185..270 | 146 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6788 | 188..258 | 142 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6886 | 188..260 | 133 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6852..6929 | 188..266 | 130 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6809 | 185..258 | 129 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1094..1167 | 187..254 | 129 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6858 | 185..251 | 124 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1185 | 188..283 | 122 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2838 | 185..255 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6825 | 185..251 | 118 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6921 | 186..239 | 117 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2425 | 188..239 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2493 | 185..258 | 116 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6845 | 188..258 | 116 | 66.7 | Plus |
FMO14241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:26 Download gff for
FMO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP100F-RJ | 1432..2216 | 10..785 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:07:57 Download gff for
FMO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP100F-RJ | 1432..2216 | 10..785 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:07:57 Download gff for
FMO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31818032..31818118 | 10..96 | 100 | -> | Plus |
| 3R | 31833397..31833981 | 97..680 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:26 Download gff for
FMO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27643754..27643840 | 10..96 | 100 | -> | Plus |
| arm_3R | 27659119..27659703 | 97..680 | 99 | -> | Plus |
