FMO14243.5prime Sequence
971 bp (881 high quality bases) assembled on 2014-07-25
> FMO14243.5prime
TCAGTCGACATGTACACACCACACCCATTTGGTTTCCTAATCATCCTCGT
TCCAATGACAAATGCAATGCGGGCGATTGCTGCAATCGCAGCAGGAGTGG
GTTCAGTGGCCGCCACGGTCGCAACCAGCACCACCAGTTCCATCAGCAGC
AGCACCACCATCATCAACACCAGTAGCGCCACTACCATCGGCGGGAATCA
CACCAGTGGGAGCACCGGATTCTCCACGAATTCCACGCTGCTGGACGCCG
ATCATCTGCCGCTGCAGCTCACGACCGCCAAGGTGGACCTGGACATTGAA
ATCGACATCCAACTGCTGACAAATGGCTACGATGGCACAACGTTGACATC
GTTCTACAATGAGAGCAGCTGGACAAATGCGTCTGAAATGGATACAATAG
TTGGCATCTTCCTATCGGTGCTGATATTCCTTTCGGTGGCCGGAAACATC
CTGGTGTGCCTGGCCATCTACACGGAGCGCAGCCTGCGCCGGATCGGCAA
TCTGTTCCTGGCCTCGTTAGCGATTGCGGATCTCTTCGTGGCCTCGCTGG
TGATGACCTTTGCCGGTGTCAACGATTTGCTGGGATATTGGATCTTTGGA
GCGCAATTTTGTGATACTTGGGTGGCCTTTGATGTCATGTGCTCGACGGC
GTCAATTCTGAACCCTGTGCGCCATCTCGATGGACCGCTACATTCACATC
AAGGATCCGCTCAGATACGGCCGTTGGGTGACACGACGCGTGGCTGTCAT
CACCATCGCCGCCATTTGGCTGCTGGCCGCGTTCGTCTCCTTTGTGCCCA
TCTCGTTGGGCATCCATCGGGCCCGACAGCCGCTGATTTTCGAGGACCAT
GGCCAAAAAGTATTCCAACATGGCGCTCTGGACCTCACGCCCCACCTACG
CCGTCGTGTCCAAGCTGTATCAGTTTCTACCTCCCCCTGGCGTGAGTCCA
TGAGTGGCACTCTACCTGTGG
FMO14243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dop1R1-RC | 2616 | CG9652-RC | 488..1433 | 9..965 | 4420 | 98.3 | Plus |
| Dop1R1-RF | 2661 | CG9652-RF | 924..1478 | 400..965 | 2465 | 97.2 | Plus |
| Dop1R1-RE | 2661 | CG9652-RE | 924..1478 | 400..965 | 2465 | 97.2 | Plus |
| Dop1R1-RF | 2661 | CG9652-RF | 488..883 | 9..404 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14213986..14214323 | 346..9 | 1675 | 99.7 | Minus |
| 3R | 32079331 | 3R | 14204250..14204431 | 584..403 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 14180236..14180455 | 936..712 | 785 | 95.1 | Minus |
| 3R | 32079331 | 3R | 14191739..14191869 | 714..583 | 610 | 99.2 | Minus |
| 3R | 32079331 | 3R | 14204751..14204813 | 404..342 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-29 00:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6936 | 89..235 | 194 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6885 | 79..226 | 189 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6683..6838 | 53..206 | 181 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2461 | 52..196 | 173 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6827 | 124..216 | 168 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2424 | 113..216 | 166 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6806 | 130..216 | 156 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2441..2544 | 79..186 | 152 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6945 | 89..260 | 151 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2466 | 124..268 | 147 | 59.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1155 | 122..217 | 138 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2506 | 123..196 | 127 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1586 | 126..173 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2379 | 144..216 | 122 | 63 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3322 | 92..172 | 122 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2609..2662 | 121..172 | 121 | 72.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1165 | 88..167 | 119 | 64.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1011 | 140..177 | 118 | 78.9 | Plus |
FMO14243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:30 Download gff for
FMO14243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dop1R1-RC | 480..1422 | 2..953 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:08:07 Download gff for
FMO14243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dop1R1-RC | 480..1422 | 2..953 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:08:07 Download gff for
FMO14243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14180223..14180452 | 715..953 | 94 | <- | Minus |
| 3R | 14191739..14191868 | 584..714 | 99 | <- | Minus |
| 3R | 14204251..14204430 | 404..583 | 100 | <- | Minus |
| 3R | 14204752..14204812 | 343..403 | 100 | <- | Minus |
| 3R | 14213990..14214327 | 2..342 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:30 Download gff for
FMO14243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10005945..10006174 | 715..953 | 94 | <- | Minus |
| arm_3R | 10017461..10017590 | 584..714 | 99 | <- | Minus |
| arm_3R | 10029973..10030152 | 404..583 | 100 | <- | Minus |
| arm_3R | 10030474..10030534 | 343..403 | 100 | <- | Minus |
| arm_3R | 10039712..10040049 | 2..342 | 98 | | Minus |
