FMO14249.5prime Sequence
799 bp (536 high quality bases) assembled on 2014-07-25
> FMO14249.5prime
TCAGTCGACATGGCTGGCCATCAGTCGCTGGCACTTTTGTTGGCCACGCT
AATTAGCAGCTGGCCAAAAGCCTCTTGGGGCGCCACTGGAAACGGTAGTA
TCATAAGCGTTAGCAACAGCAGTGGCAACAACTATGCATTCACCTCGGAA
CACACGGATCATTCGGATCACAATGCCAACGACTCCATGGAATATGATGC
AGAGAGTGTGGCCCTCGAACGGATCGTATCCACAATAGTTCCCGTATTCT
TTGGCATTATCGGATTCGCAGGACATTTGGGCAATGGTCTGGTTATTCTG
GTGGTTGTGGCCAACCAGCAAATGCGCTCCACCACCAATCTGCTGATAAT
CAACCTGGCCGTCTCGGACATTCTGTTCGTCATCTTCTGTGTCCCGTTCA
CGGCTACCGATTACGTGCTGCCGGAGTGGCCGTTTGGCAATGTGTGGTGC
AAGTTTGTCCAGTACATGATTGTGGGTACGTGCCACTGCAGTGTTTACAC
GCTGGTGCTGATGTCCTTTGATCGCTTCCTGGCCGTCGTTCATCCCGTGA
CTAGCATGTCCCTGCGAACGGAGCGCAATGCCACACTGGCCATCATGTGC
GCCTGGATAACGATTGTGACGACTGCGATTCCGGTGGCACTTTCGCACTC
GTGAGGATTTATCAGTACCACTGGAATGCTGGCACCGCTTGCGTCTTTCC
ACGAGAGAGATCTGGAGTCTCGTCGGTTCAGGTCTCATCTTTCTATCGTC
ATATGTGCATCGATGACGCTGATTTGATACGTATTATGGGATGCTTGCT
FMO14249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R1-RD | 3655 | CG2872-RD | 553..1353 | 10..799 | 3560 | 97.1 | Plus |
| AstA-R1-RB | 3704 | CG2872-RB | 602..1402 | 10..799 | 3560 | 97.1 | Plus |
| AstA-R2-RC | 1994 | CG10001-RC | 929..1186 | 289..546 | 270 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3645471..3645762 | 10..301 | 1445 | 99.7 | Plus |
| X | 23542271 | X | 3655580..3655770 | 301..491 | 925 | 99 | Plus |
| X | 23542271 | X | 3655845..3655946 | 487..588 | 510 | 100 | Plus |
| X | 23542271 | X | 3656667..3656778 | 588..698 | 480 | 97.3 | Plus |
| 3R | 32079331 | 3R | 28743597..28743854 | 546..289 | 270 | 73.6 | Minus |
Blast to na_te.dros performed 2014-11-29 00:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1106..1180 | 84..159 | 117 | 65.4 | Plus |
FMO14249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:39 Download gff for
FMO14249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AlstR-RB | 593..1398 | 1..795 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:08:23 Download gff for
FMO14249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-R1-RB | 593..1398 | 1..795 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:08:23 Download gff for
FMO14249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3645462..3645762 | 1..301 | 98 | -> | Plus |
| X | 3655581..3655770 | 302..491 | 98 | -> | Plus |
| X | 3655850..3655945 | 492..587 | 100 | -> | Plus |
| X | 3656667..3656817 | 588..731 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:39 Download gff for
FMO14249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3549883..3549978 | 492..587 | 100 | -> | Plus |
| arm_X | 3550700..3550850 | 588..731 | 94 | -> | Plus |
| arm_X | 3539495..3539795 | 1..301 | 98 | -> | Plus |
| arm_X | 3549614..3549803 | 302..491 | 98 | -> | Plus |
