FMO14256.5prime Sequence
1006 bp (899 high quality bases) assembled on 2014-07-25
> FMO14256.5prime
TCAGTCGACATGCCGCGCAAGTTGCTTAAATTCCTTATCATCTTCGACAA
CACTTCCCTCCTGTACTTCCCGGGCCAGTTTCTCTCCGGACGGGTTCTAA
TCGAATTGCAGGATGAGACGCCTGCTTTGGGACTTCATTTCCATGTGGTA
GGCGAAGGGGTCGTGCGCAACGGGCGGCGACAGGAGCGGACATACGATAA
GGAGAACTATATCGACTTTCGGATGCGACTTCTGGGGGACGTAGACCAAG
GAGGTCCAGCTATACTCTCGCCAGGAATTCACAGCTTCCCCTTCAAACTC
GGCTTGCCACTGGGTCTTCCATCTACATTTCTCGGTCGGTACGGCTGGAT
TCAGTTCTACTGCAAGGCGGCGCTCCGCGAGAACAATGGCATTATCCATA
AGAACCACCAGGTCTTCATTGTGATGAATCCCATCGACCTAAACCTTGAA
AAGCCCATCTTAGCACAACCGTTCACCTGCGAAGTTGAGCACAAGCTAGG
CGTCGTCTGTGTTGGTGGAGGTCAGATAAAGTGCAGAGTGTCCCTTGATC
GCGGTGGGTATGTGCCCGGCGAGAATATTCTGGTCACCGCATTTATATCC
AACTACAGTAATGTGTCCATTAAACGGACTAAGGCATCCCTCACTGAGAC
CATCGAGTATTTGGCGCGGGGGAAGGTGGTGCAAACGGAAAAACGGGAGC
TGGCTGTTTTAGTTCGTGGCAAGATCCGTCCGGGGGCCAAAGACGAGTGG
CACACGAGCTTTACGTTCCACCCCTGCCGCCGACCAATCTTCATGGCTGC
CACCTGATCAAATATCCTACGACGTCTTCTTCGTGATCGACCCAGTCCAT
GGAGGACGAGATAGCTACAGCTTCTATCGTGCTTGCGACGTACCCTTTCG
ACACTCCGGTGATGCGGTCAATGCCAACACCTGGCCCGGAATCGGTGCTT
AAGCCGGAAACGCACACCCCCCTACCGTTCCACACTAACCATTATTCCTG
CTGGCT
FMO14256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vdup1-RE | 1384 | CG7047-RE | 168..1161 | 10..998 | 4600 | 98.2 | Plus |
| Vdup1-RD | 2020 | CG7047-RD | 608..1601 | 10..998 | 4600 | 98.2 | Plus |
| Vdup1-RA | 1676 | CG7047-RA | 460..1453 | 10..998 | 4600 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 177382..177837 | 465..10 | 2280 | 100 | Minus |
| 3L | 28110227 | 3L | 176752..177081 | 969..647 | 1215 | 96.1 | Minus |
| 3L | 28110227 | 3L | 177146..177328 | 648..466 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:30:15 has no hits.
FMO14256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:51 Download gff for
FMO14256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vdup1-RA | 449..1448 | 1..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:08:36 Download gff for
FMO14256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vdup1-RA | 449..1448 | 1..992 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:08:36 Download gff for
FMO14256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 176749..177079 | 649..970 | 95 | <- | Minus |
| 3L | 177146..177328 | 466..648 | 100 | <- | Minus |
| 3L | 177382..177841 | 1..465 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:51 Download gff for
FMO14256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 176749..177079 | 649..970 | 95 | <- | Minus |
| arm_3L | 177146..177328 | 466..648 | 100 | <- | Minus |
| arm_3L | 177382..177841 | 1..465 | 98 | | Minus |
