FMO14266.5prime Sequence
954 bp (850 high quality bases) assembled on 2014-07-25
> FMO14266.5prime
TCAGTCGACATGTACGGCAACAATAATCCGGGTAGTAACAATAATAATGG
TGGTTATCCCCCATATGGCTACAACAACAAGTCGAGTGGTGGGCGTGGAT
TTGGGATGTCCCATTCTCTGCCATCCGGAATGGATACAGAATTTTCATTT
CCAAGTTCATCGTCGCGTCGTGGTTACAATGATTTCCCCGGCTGCGGCGG
CAGCGGCGGAAATGGTGGGAGTGCCAACAATTTAGGGGGCGGCAACATGT
GCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGGA
TTGTCGCTGGGCAGCGGTGGTAGTGATGATCTCATGAACGATCCTCGGGC
AAGCAACACCAACCTGATTGTCAACTACTTGCCCCAGGACATGACCGATC
GCGAGCTGTACGCCCTATTCAGAGCCATTGGACCCATCAACACGTGCAGA
ATCATGCGAGACTATAAGACTGGCTACAGTTTTGGTTATGCTTTCGTGGA
CTTCACATCGGAAATGGACTCGCAGCGTGCTATTAAAGTGCTGAATGGCA
TCACAGTGCGCAACAAGCGGCTTAAGGTTTCCTATGCACGTCCCGGCGGA
GAATCGATCAAGGACACCAATCTGTATGTGACCAATCTGCCGCGTACCAT
AACCCGACGATCAGCTGGACACGATCTTCGGCAAGTACGGTTCCATTGTG
CAGAAGAACATCTTGCGTGACAAGCTCACAGGTCGTCCTCGTGTGTGGCC
TTTGTTCGGTACACAGCGTGAGGAGGCCCAGGAGGCCATTTCGCGCTGAC
AACGTATACCCGAGGCGGATCACAGCGCTGTCCGTCGTTGCTGAGAGCAT
GCCAAGCGAAGCGGCCCACTTTAATGTCGCAGATGGGCGTGGTTCCAGCA
AATGTAGCCACCCGCCGGCCACCACAAACGCCAGCACATATATGGGCCGC
GCGC
FMO14266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RX | 5164 | CG43770-RX | 426..1366 | 10..941 | 4235 | 97.8 | Plus |
| Sxl-RJ | 1886 | CG43770-RJ | 482..1422 | 10..941 | 4235 | 97.8 | Plus |
| Sxl-RH | 5164 | CG43770-RH | 426..1366 | 10..941 | 4235 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7085619..7085955 | 468..132 | 1685 | 100 | Minus |
| X | 23542271 | X | 7085156..7085341 | 760..575 | 835 | 98.9 | Minus |
| X | 23542271 | X | 7085408..7085519 | 578..467 | 560 | 100 | Minus |
| X | 23542271 | X | 7091674..7091750 | 86..10 | 385 | 100 | Minus |
| X | 23542271 | X | 7087613..7087661 | 133..85 | 245 | 100 | Minus |
| X | 23542271 | X | 1371663..1371769 | 357..463 | 205 | 79.4 | Plus |
Blast to na_te.dros performed 2014-11-29 00:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 690..729 | 223..184 | 110 | 75 | Minus |
FMO14266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:12:07 Download gff for
FMO14266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RH | 419..1375 | 1..954 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:08:53 Download gff for
FMO14266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RH | 419..1375 | 1..954 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:08:53 Download gff for
FMO14266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7091674..7091757 | 1..86 | 96 | | Minus |
| X | 7085158..7085339 | 577..758 | 98 | <- | Minus |
| X | 7085410..7085517 | 469..576 | 100 | <- | Minus |
| X | 7085619..7085954 | 133..468 | 100 | <- | Minus |
| X | 7087614..7087659 | 87..132 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:12:07 Download gff for
FMO14266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6979191..6979372 | 577..758 | 98 | <- | Minus |
| arm_X | 6979443..6979550 | 469..576 | 100 | <- | Minus |
| arm_X | 6979652..6979987 | 133..468 | 100 | <- | Minus |
| arm_X | 6981647..6981692 | 87..132 | 100 | <- | Minus |
| arm_X | 6985707..6985790 | 1..86 | 96 | | Minus |
