FMO14268.5prime Sequence
603 bp (603 high quality bases) assembled on 2014-07-25
> FMO14268.5prime
TCAGTCGACATGTTTGCACTTTCTGCTCGCCACGCACTGCGGCGCACTCG
AATATTCGCCATTCCACGCTTTTTCGCAGATTCACGCCAAGACAGCGACA
ATCCGGACAAAAGGTATTCCGGACCAGCAGCGACTATGGATAACAAGAGC
GAGAAGGTTACGGTGAACAAGGAGGAGCTGCGCAAGCGCCTGACCCCGGT
GCAGTATCAGGTTACCCAGGAGGCGGGCACCGAGCGACCCTTCACAGGTT
GCTACAACAAACACTACGAGAAGGGCGTGTACCAGTGCATCGTGTGCCAC
CAGGATCTGTTCAGCTCGGAGACCAAGTACGACTCGGGATGCGGATGGCC
GGCCTTCAACGATGTCCTAGACAAGGGCAAGGTCACGCTGCACCGCGATG
CCAGCATACCAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCGATGCTCC
GCCCATATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGCATCGACG
CTTCTGCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCGACGCCAT
CGAAAGCGGATCCATCGACGGCCTCGTCCAAGAAAGCAAGCTTTCTAGAC
CAT
FMO14268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RJ | 2392 | CG6584-RJ | 250..825 | 10..585 | 2865 | 99.8 | Plus |
| SelR-RH | 2277 | CG6584-RH | 201..710 | 76..585 | 2535 | 99.8 | Plus |
| SelR-RG | 2298 | CG6584-RG | 201..731 | 76..585 | 2315 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10866807..10866979 | 249..77 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 10865454..10865628 | 585..411 | 860 | 99.4 | Minus |
| 3R | 32079331 | 3R | 10866528..10866698 | 413..243 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 10867972..10868041 | 79..10 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:31:02 has no hits.
FMO14268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:12:10 Download gff for
FMO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RJ | 246..828 | 2..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:08:59 Download gff for
FMO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RJ | 246..828 | 2..589 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:08:59 Download gff for
FMO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10865451..10865626 | 413..589 | 98 | <- | Minus |
| 3R | 10866529..10866693 | 248..412 | 100 | <- | Minus |
| 3R | 10866809..10866976 | 80..247 | 100 | <- | Minus |
| 3R | 10867972..10868045 | 2..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:12:10 Download gff for
FMO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6691173..6691348 | 413..589 | 98 | <- | Minus |
| arm_3R | 6692251..6692415 | 248..412 | 100 | <- | Minus |
| arm_3R | 6692531..6692698 | 80..247 | 100 | <- | Minus |
| arm_3R | 6693694..6693767 | 2..79 | 94 | | Minus |
