FMO14271.5prime Sequence
1016 bp (904 high quality bases) assembled on 2014-07-25
> FMO14271.5prime
TCAGTCGACATGGAAAAATATTTAACAAAAATGCCCATCAAATCAAAAGC
AAATGAAGTTCCCAAGGAGGCGGGCGTCAAAAAGGAGACTCCCAAAGTGG
CAAGGAAAGCAACAAAAAAGGATACTCCAAAAGAGTTGAAAGATAAAGAA
AATGCTGGAGATGATAATACGCCAAAGCAAACGAAAGGAAGACCCGGTAG
ACCGGCTGCCAAGCGAAAAAATCTGGATACTCCAGATGTGAAGACTGAGA
AGTTAGCGATGGAGGAAGAAAATCCGCCCAAGCGCCGGAGTTCCAGGCTG
ACCAGAAGCACTCGTTCAATGGCAGAGGATGGGTCTCCATCACCGGAGAA
GGAAAAGCCCGAAAAGCTTCCCTTTATTAAATACAAGGGTGCTATAAAGT
ATTTCACGGAGAGCCAGGATATTGCGGCATCTGCTGACGATGTTTTGCAA
TGGGTGGAAAAACAAAAAGATGAGGTAGTGCCCATGGCCTTCGACATGGA
GTGGCCCTTCTCTTTCCAAACAGGACCTGGCAAGTCTGCCGTCATCCAGA
TATGCGTGGATGAAAAGTGCTGCTACATATACCAGCTGACTAATGTGAAG
AAACTGCCTGCGGCCCTGGTGGCCCTTATCAATCATCCCAAAGTGCGATT
GCATGGCGTGAACATAAAGAACGATTTCCGAAAGCTGGCACGTGATTTCC
CCGAGGTTACAGCCGAACCACTGATAGAGAAATGCGTGGACTTGGGTCTT
TGGTGCAATGAGGTCTGTGAGACCGGCGGGCGCTGGAGCTTGAGCGATTA
ACCAACTTTATAGCCCAGAAGCCATGGACAAAGCAAGAAGTGCGCATGAG
CAGTTGCATTGTCATTCCGCTGGACGAGAATCACTAATTGTACGCCCGCC
CATCGATGTTCTTATATTGGTTCACGGTTATTTTATTCGTTGAATTGGAA
ACGCCGCGAGAGGTTAGATTAAAAATTGGATAAGAGTTCTAAGGAAAAAA
CCGAGAATGCTGTCCT
FMO14271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WRNexo-RC | 1495 | CG7670-RC | 68..1064 | 10..1012 | 4340 | 96.8 | Plus |
| WRNexo-RB | 1498 | CG7670-RB | 68..1067 | 10..1012 | 4315 | 96.7 | Plus |
| WRNexo-RA | 1495 | CG7670-RA | 68..1064 | 10..1012 | 4260 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18365121..18365345 | 671..447 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 18365407..18365614 | 447..240 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 18364837..18365065 | 896..672 | 795 | 93.9 | Minus |
| 3R | 32079331 | 3R | 18365672..18365778 | 240..134 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 18365911..18365981 | 135..65 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 18366037..18366095 | 68..10 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:30:27 has no hits.
FMO14271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:56 Download gff for
FMO14271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RC | 68..945 | 10..883 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:08:41 Download gff for
FMO14271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RC | 68..945 | 10..883 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:08:41 Download gff for
FMO14271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18365121..18365345 | 447..671 | 100 | <- | Minus |
| 3R | 18365672..18365776 | 136..240 | 100 | <- | Minus |
| 3R | 18365911..18365976 | 70..135 | 100 | <- | Minus |
| 3R | 18366036..18366095 | 10..69 | 98 | | Minus |
| 3R | 18365408..18365613 | 241..446 | 100 | <- | Minus |
| 3R | 18364850..18365065 | 672..883 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:56 Download gff for
FMO14271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14191758..14191817 | 10..69 | 98 | | Minus |
| arm_3R | 14190843..14191067 | 447..671 | 100 | <- | Minus |
| arm_3R | 14191130..14191335 | 241..446 | 100 | <- | Minus |
| arm_3R | 14191394..14191498 | 136..240 | 100 | <- | Minus |
| arm_3R | 14190572..14190787 | 672..883 | 96 | <- | Minus |
| arm_3R | 14191633..14191698 | 70..135 | 100 | <- | Minus |
