FMO14272.5prime Sequence
1038 bp (823 high quality bases) assembled on 2014-07-25
> FMO14272.5prime
TCAGTCGACATGTCCACCACCACAACAGCATCCAAGGGCTATAAGCTCGG
CAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGATCTGCCAGAGC
AGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCACCGCCGGCGAT
GGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCTCCAATACCAC
CAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATTCGCACCGCCT
ATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAAGTGCCAGATG
ATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTTCGTTCCTCAA
GCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCGCCCAAACAGG
AGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTGGAGCGAGGAG
CAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGATCGGCCAGAT
GAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTCGAGATTCTCGA
GAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACATGAAAGTGGAGT
TCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATATCATTGATTCC
GATTCGTGGCGCTTGTGGCAGCGGGTGACAAGCGTTTGATGGTCGACAGC
AGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGATTGGATACCGTAAA
GAGGACTTCATTTGGTGACGACACTGCTGATATGTGCCCAGAGATCACTG
TGTCATCTGATGGCAGTGCTTCGATTATCGCACAGCGAGAGATAGCACAG
CTGTCGATCCTCGGCTTATGTGGAACTCGCGTGAGTCGGCCACAAGGACC
GGAGGAACGTTGCGCATTGTCGCGAATATGAATCGGGGTGAGCAACTGAT
CTTGTGGCCGCGCCGGCGGATCATGATGGGTCAGACGTTTCCGCGCACAC
CTACCGTATCATGTCGCCGCCAACCAGAAAATAAGTGG
FMO14272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade5-RB | 2547 | CG3989-RB | 241..1239 | 6..966 | 4020 | 95.9 | Plus |
| ade5-RA | 1826 | CG3989-RA | 241..1242 | 6..966 | 3980 | 95.6 | Plus |
| CG40801-RB | 429 | CG40801-RB | 59..403 | 35..383 | 1525 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12758577..12758850 | 765..497 | 1120 | 98.2 | Minus |
| X | 23542271 | X | 12759711..12759912 | 236..35 | 1010 | 100 | Minus |
| Y | 3667352 | Y | 3059275..3059476 | 236..35 | 920 | 97 | Minus |
| Y | 3667352 | Y | 3231314..3231515 | 35..236 | 920 | 97 | Plus |
| Y | 3667352 | Y | 3267332..3267533 | 236..35 | 905 | 96.5 | Minus |
| U | 3151297 | U | 2460019..2460220 | 35..236 | 905 | 96.5 | Plus |
| X | 23542271 | X | 12759460..12759610 | 383..233 | 755 | 100 | Minus |
| Y | 3667352 | Y | 3267089..3267236 | 383..232 | 620 | 95.4 | Minus |
| X | 23542271 | X | 12758922..12759038 | 494..378 | 585 | 100 | Minus |
| Y | 3667352 | Y | 3059062..3059204 | 383..237 | 580 | 94.6 | Minus |
| Y | 3667352 | Y | 3091728..3091869 | 176..35 | 560 | 93 | Minus |
| Y | 3667352 | Y | 3205825..3205966 | 35..176 | 560 | 93 | Plus |
| Y | 3667352 | Y | 3231586..3231711 | 237..366 | 510 | 94.6 | Plus |
Blast to na_te.dros performed 2014-11-29 00:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 1485..1524 | 302..263 | 110 | 75 | Minus |
FMO14272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:11:57 Download gff for
FMO14272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade5-RB | 237..1016 | 1..774 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:08:43 Download gff for
FMO14272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade5-RB | 237..1016 | 1..774 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:08:43 Download gff for
FMO14272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12758567..12758854 | 494..774 | 96 | <- | Minus |
| X | 12758923..12759035 | 381..493 | 100 | <- | Minus |
| X | 12759463..12759607 | 236..380 | 100 | <- | Minus |
| X | 12759712..12759912 | 35..235 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:11:57 Download gff for
FMO14272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12652600..12652887 | 494..774 | 96 | <- | Minus |
| arm_X | 12652956..12653068 | 381..493 | 100 | <- | Minus |
| arm_X | 12653496..12653640 | 236..380 | 100 | <- | Minus |
| arm_X | 12653745..12653945 | 35..235 | 100 | <- | Minus |
