FMO14281.5prime Sequence
996 bp (910 high quality bases) assembled on 2014-07-25
> FMO14281.5prime
TCAGTCGACATGTGTGTGTGTTTGTGCATGTTTTATGCAGTTCCTTCGTT
TCGTTTTGCTTTGCGGGAGTCTCGCGGCAAGAGACCACTGAAAATCTGGG
ACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGGACCTTCGAGGAG
CTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGCTTCAGAACCGGT
GCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGGATGGCGAATACT
TTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTAAGGCAGGGCGAG
CGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGCCATATCAGCTAT
ACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGTTGCACGATGAGA
CACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTCACGGTCGTTCTG
CACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGGAGGAGGAGGCGG
TGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCCTGGGCAGCAGCA
ATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAGAAGGGCCTCTCC
GCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCAGTCCTCCCAGCC
GCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACGACGGACCGGCGA
GCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGAGTTGTGATACCC
GGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTTCGACAGCACCGT
AGGCGTTGGGTGTGGGAGCTGTCATGTGCACACGCCGGATTGCGCCCACC
ACGCCCACACGCCAAGCAGGGCGGGCAGTCCAGCACACCGAGTGCCGACT
TCCACTGCTGGTGGCTGCACGAAGAAGGGGGTGCAGATCGCTGTGGACCA
GACGTGGACCAGTCGCCATCCAGGAAGGAAAGATGTCGCTCCTCAG
FMO14281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-2-RD | 1827 | CG1975-RD | 18..990 | 10..980 | 4450 | 97.9 | Plus |
| Drep-2-RC | 5839 | CG1975-RC | 1013..1929 | 66..980 | 4170 | 97.7 | Plus |
| Drep-2-RB | 5203 | CG1975-RB | 988..1904 | 66..980 | 4170 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9298266..9298859 | 337..929 | 2625 | 98 | Plus |
| 2R | 25286936 | 2R | 9297258..9297536 | 59..337 | 1365 | 99.3 | Plus |
| 2R | 25286936 | 2R | 9293626..9293683 | 10..67 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:31:46 has no hits.
FMO14281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:12:32 Download gff for
FMO14281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-2-RD | 11..938 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:09:25 Download gff for
FMO14281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-2-RD | 11..938 | 1..930 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:09:25 Download gff for
FMO14281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9293619..9293682 | 1..66 | 93 | -> | Plus |
| 2R | 9297266..9297536 | 67..337 | 100 | -> | Plus |
| 2R | 9298267..9298859 | 338..930 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:12:32 Download gff for
FMO14281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5181124..5181187 | 1..66 | 93 | -> | Plus |
| arm_2R | 5184771..5185041 | 67..337 | 100 | -> | Plus |
| arm_2R | 5185772..5186364 | 338..930 | 98 | | Plus |
